Pairwise Alignments

Query, 393 a.a., amino acid ABC transporter permease from Pseudomonas simiae WCS417

Subject, 233 a.a., amino acid ABC transproter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  105 bits (261), Expect = 2e-27
 Identities = 59/126 (46%), Positives = 80/126 (63%), Gaps = 1/126 (0%)

Query: 260 ELLALTLALTVYTAAFIAEIVRSGIKSVSHGQTEAARSLGLRPGPTLRKVIIPQALRVII 319
           E  A  ++LTVYTAAFIAE +RSGI S+   Q EA+R+ GL     +  V++PQA R+I+
Sbjct: 100 EFAAGVISLTVYTAAFIAEEIRSGIFSIPRTQLEASRACGLSFMQAMSYVVLPQAFRIIV 159

Query: 320 PPLTSQYLNLAKNSSLAAGIGYPEMVSLFAGTVLNQTGQAIEVIAITMSVYLAISISISL 379
           PPL SQ LNL KNSSL   IG  E+ +  A  + + T    E   ++  +YL IS+ +SL
Sbjct: 160 PPLISQALNLFKNSSLCMTIGVMEL-TYMARQIESYTFHGFEAFTVSTLIYLCISLMVSL 218

Query: 380 LMNWYN 385
           L+N YN
Sbjct: 219 LINLYN 224



 Score = 51.2 bits (121), Expect = 3e-11
 Identities = 30/95 (31%), Positives = 48/95 (50%)

Query: 85  VIGLLNTLLVTFIGVILATLLGFVIGVARLSPNWMINKLATVYVEVFRNIPPLLQILFWY 144
           V G++ T  ++ + ++LA LLG +I V RLS        +  + E FRN P L+QI FWY
Sbjct: 20  VQGVITTCQLSGLSLVLAMLLGTLIAVMRLSGVRPFVWFSVAFTEFFRNTPLLVQIFFWY 79

Query: 145 FAVFLTMPGPRNSHNFGDTFFVSSRGLNMPAAIAA 179
           F     +P   N   +   F  ++  +++    AA
Sbjct: 80  FGSDAVLPDAVNQWLYKQNFEFAAGVISLTVYTAA 114