Pairwise Alignments

Query, 343 a.a., amino acid ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 373 a.a., extracellular solute-binding protein, family 3 (NCBI) from Rhodospirillum rubrum S1H

 Score =  222 bits (566), Expect = 1e-62
 Identities = 123/333 (36%), Positives = 185/333 (55%), Gaps = 4/333 (1%)

Query: 13  AAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDASGKILGIDADVCRAVAAA 72
           AA  L     A  G TL +++ +G V CG +  +PGF  PD+ G   G   D CRA+AAA
Sbjct: 43  AALTLAAPALAANGDTLTSIRDRGSVTCGTNP-IPGFGFPDSDGNWRGFFIDFCRALAAA 101

Query: 73  VFGDATKVKFSQLNAKERFTALQSGEVDILSRNTTMTSSRDAGMGLKFPGFITYYDGIGF 132
             GD T  +   + +  R+ AL S   D+    +T T SRD  +G  FPG +  YDG  F
Sbjct: 102 TLGDPTAFEVVPVESNSRWEALNSHTTDVNVDGSTWTLSRDTALGFDFPG-VLIYDGQRF 160

Query: 133 LVNNKLGVKSAKELDGATICIQAGTTTELNVSDYFRGNNLKYTPITFDTSDESAKSLESG 192
           L    +   S K   G  +CI  GTT E+N+ D+ + N+L+ T I  ++ + +  S   G
Sbjct: 161 LAKPSVPEGSVKAAAGLRVCIIMGTTAEVNLRDFLKKNDLEMTVIATESDEGAWTSFLKG 220

Query: 193 RCDVLTSDKSQLFAQRS-KLAAPKDYVVLPETISKEPLGPVVRNGDDEWLAIVRWVGYAM 251
           RC++  +D   L  + +  +  P+   ++ E ISKEPLGPVVR  D +WL I RWV   +
Sbjct: 221 RCELFVNDGIGLALRNALHMTPPRVNHLMTEAISKEPLGPVVRGDDHQWLEINRWVLNVL 280

Query: 252 LNAEEAGITSKN-VEAEAKSTKNPDVARLLGADGEYGKDLKVKKDWVVQIVKQVGNYGEV 310
           + AEEAGI+S   V+    +  + +    +G   +    L ++  W  +++  VGNYGEV
Sbjct: 281 IAAEEAGISSTTLVDPSPTADLSSEDRVFVGGPEDNAAALGLEPGWARRVIAAVGNYGEV 340

Query: 311 FERNLGKSTPLEIDRGLNALWNNGGIQYAPPVR 343
           F+RNLGK + + +DRG+NALW+ GG+  +PP++
Sbjct: 341 FDRNLGKGSEIGLDRGVNALWSEGGLMISPPLQ 373