Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  283 bits (725), Expect = 6e-81
 Identities = 156/373 (41%), Positives = 218/373 (58%), Gaps = 3/373 (0%)

Query: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 159
           F    L   L++ + +LG    TPIQ Q +   L GKD +  AQTGTGKTAAF + +I +
Sbjct: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67

Query: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219
            ++ P  +E    E RAL++ PTREL  Q+        K T L ++   GG     QL H
Sbjct: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127

Query: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279
           L     DIL+ATPGRLLD      + L  VEV+VLDEADRMLDMGF+P +++++R+  P 
Sbjct: 128 LRGG-VDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186

Query: 280 SERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYN 339
             RQTL FSATF   +  +A +   DP  V++   N  +E V+Q +Y V    K +LL  
Sbjct: 187 --RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSY 244

Query: 340 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 399
           L+    W++V+VF   +     + E L  DG+ A  ++GD  Q  R K L+ F+ GK+R 
Sbjct: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304

Query: 400 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLP 459
           L+ATDVA RG+ I  +  V+N+ +P   +DYVHRIGRTGRAG AG+++S    D+  QL 
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLE 364

Query: 460 SIETLLGRKISCE 472
           +IE LL  ++  E
Sbjct: 365 AIERLLNTRLPQE 377