Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 397 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  261 bits (667), Expect = 3e-74
 Identities = 154/370 (41%), Positives = 215/370 (58%), Gaps = 6/370 (1%)

Query: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 159
           F    L+  L+  +  LG+   T IQ Q +   L G+D I  AQTGTGKTA+F++ I+ +
Sbjct: 3   FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62

Query: 160 LLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLKH 219
           L Q    +++ +   RALI+ PTREL +Q+A+      K TGL  +   GG+D   Q + 
Sbjct: 63  LRQGQTQRKKRV---RALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQR 119

Query: 220 LEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPK 279
           L     D+LVATPGRL+D   +  V+ + +E++VLDEADRMLDMGFI  + +II   P  
Sbjct: 120 L-IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLP-- 176

Query: 280 SERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLYN 339
           SE Q LLFSAT +  V  LAK    DP  + I A   +  N+ Q +  V    K  LL +
Sbjct: 177 SEVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSH 236

Query: 340 LVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRV 399
           L+N+  W++ ++F   K    ++  +L + G++A        Q  R + LE F+ GKI+ 
Sbjct: 237 LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296

Query: 400 LVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQLP 459
           LVAT VA RGI ID +S V+N+ LP   D+YVHRIGRTGRA A G +ISF  +D+   L 
Sbjct: 297 LVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNLC 356

Query: 460 SIETLLGRKI 469
            IE+ LG  I
Sbjct: 357 MIESRLGHLI 366