Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  272 bits (695), Expect = 2e-77
 Identities = 168/392 (42%), Positives = 232/392 (59%), Gaps = 16/392 (4%)

Query: 100 FHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQ 159
           F +  L+  ++  +   GF   TPIQAQ +   L   D IG AQTGTGKTAAF + +I +
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 160 LL---QTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQ 216
           L+   + P P+       RAL++APTRELV QIA +     K + L +   VGG+  +KQ
Sbjct: 64  LVADGRRPDPRNI-----RALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQ 118

Query: 217 LKHLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQT 276
            + L AR  DILVATPGRLLD   R  V L     +VLDEAD+MLD+GFI  +R+I +  
Sbjct: 119 TEQL-ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLV 177

Query: 277 PPKSERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGAD-KYK 335
           P    RQTLLFSAT  + +  LA ++ TDP  VE+     A++ VEQ+++ V G D K  
Sbjct: 178 P--KNRQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTT 235

Query: 336 LLYNLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREG 395
           +L   +  N     ++F+  K    ++ + L   G  AA + G+  Q +R + L+ FR+G
Sbjct: 236 ILKQTLTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDG 295

Query: 396 KIRVLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDS 455
           +IRVLVATDVA RGI I G++HV N+ LPEVPD YVHRIGRT R G  G++I+F   D+ 
Sbjct: 296 EIRVLVATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEI 355

Query: 456 YQLPSIETLLGRKISCETPPTHLLRPVERKRP 487
             L  IE L+G +I+  +       P ++ RP
Sbjct: 356 RLLRDIEKLMGIQIAVASGEA----PADQARP 383