Pairwise Alignments

Query, 487 a.a., ATP-dependent RNA helicase RhlB from Pseudomonas simiae WCS417

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  290 bits (742), Expect = 7e-83
 Identities = 156/377 (41%), Positives = 226/377 (59%), Gaps = 5/377 (1%)

Query: 99  RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIIT 158
           RF  F   PE++ AI D G+   TPIQ Q +     G+D +  AQTGTGKTAAF + I+ 
Sbjct: 2   RFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQ 61

Query: 159 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTGLNVMTFVGGMDFDKQLK 218
           ++++ P   E      R LI+ PTREL  Q+A++    +KY   +V+T  GG+  + Q +
Sbjct: 62  KMVENP--SETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQ 119

Query: 219 HLEARHCDILVATPGRLLDFNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPP 278
            L+ R  DI+VATPGRLL+     ++ L  V+ +VLDEADRMLDMGF   +++I++    
Sbjct: 120 KLK-RGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNK 178

Query: 279 KSERQTLLFSATFTEDVMNLAKQWTTDPSIVEIEAENVASENVEQHIYAVAGADKYKLLY 338
           K  RQ LLFSATF+  V  LA +    P ++  + +N  ++ V Q +Y V    K +LL 
Sbjct: 179 K--RQNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLS 236

Query: 339 NLVNDNGWERVMVFANRKDEVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIR 398
            L+    W++V+VF   +D    + + L  DG+ +  + G+  Q  R + L  F  GK+R
Sbjct: 237 ELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVR 296

Query: 399 VLVATDVAGRGIHIDGISHVINFTLPEVPDDYVHRIGRTGRAGAAGVSISFAGEDDSYQL 458
           VLVAT+VA RG+ I  + +V+NF LP + +DYVHRIGRTGRAG +GV+ISF   ++   L
Sbjct: 297 VLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTL 356

Query: 459 PSIETLLGRKISCETPP 475
             IE L+G+KI   T P
Sbjct: 357 ADIEKLIGQKIRRITVP 373