Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 1695 a.a., YD repeat protein from Pseudomonas fluorescens FW300-N2E2

 Score =  372 bits (954), Expect = e-106
 Identities = 408/1521 (26%), Positives = 635/1521 (41%), Gaps = 179/1521 (11%)

Query: 2    NVYSNAFNFNSRLNGVVDTRTGQYVCRIALATLYPQGPLEISREIALSFSLLNSDVSGNY 61
            +V SNAFNF   L   VD RTGQY   + L  L           +AL+FS LN+  SG Y
Sbjct: 6    SVPSNAFNFMQSLQSGVDPRTGQYRISLDLPELKGNDLRGPGFSLALAFSALNTTDSG-Y 64

Query: 62   GAGWRLDNTEFDLATSKLTLLTGEQYQTHGLPSVGRTLVIKDRKLKDLVVQRVGEST--- 118
            G GW +  +E+D+    L+  TGE++ T     V   L+++ +KL      R  E T   
Sbjct: 65   GIGWNVQLSEYDMNKQVLSTSTGERH-TVTANGVDGELLMETKKLDSF---RFFEYTPFQ 120

Query: 119  ----LHVIYKDGTVEILGRPSSSGPYKITAIQFEN--GERLRFSYLQGGP---LERIQND 169
                  +++K GTVEIL             I+  +  G RL  +Y        L+ + +D
Sbjct: 121  DKKQFMLVHKTGTVEILRERGMGSDRVAVPIEIYSPLGHRLVLAYTSFNGHTLLQSVNDD 180

Query: 170  QGQDLL-VLTYMGALLVEADVLIDGGRYARTRIAYGNVNNQLVRV-TVPYDRTQAPETAA 227
             G  LL V    G L ++    +D    AR R      + +L    T+     ++ +   
Sbjct: 181  AGIPLLSVRRDAGKLDLDLYPNVDEALPARARYTMTFDSGELKYARTIALPADESGQRGY 240

Query: 228  YTFVYHRPFRNGLIAISEVNSPMGGNTLISYE-ENGHQYANNQYIPRVVGWRQTPGG--- 283
            + F Y    ++G   +++V +P+GG+ LI Y+ E+     + +Y+PRV      P G   
Sbjct: 241  WRFDY--TIKHGHTVVTKVENPLGGSELIVYDSEHSFPGPSGRYLPRVSRHEIYPDGAPD 298

Query: 284  NQPPIGRKYSYSAGTNFTG--YPYSGGFTPGEENMYLIAGDYAYWAEETVIDVSNNDAPL 341
            N   +  +Y+Y    NF G   P   G T  ++ +   +G Y Y   ET          +
Sbjct: 299  NPDKVQVEYTYPDDKNFLGNTLPIQWG-TDNKDPLIYQSGTYDYSTVETHYLAGK---AV 354

Query: 342  YATRMTYNKFHLLTEERVTREGTRTTTSLAYNILPGKLFPDQPPNLQLPRQVVRRFELVA 401
             + + T+N+FH L  +  T+      T   Y +  G +  DQP   QLP QV+ R+ L +
Sbjct: 355  RSVKRTFNRFHSLILQTTTQGDNIQETETVYPLRNGSVL-DQPNTYQLPTQVINRWRLKS 413

Query: 402  GGNA-REEVQTMETDDYGNELSRTEASGVCVERSYYPVAGEAGKCPADPHGLFQRFVKQE 460
                 R E +T   D  GNEL+  EASG+     YY  +GE    P +P+G   + VK  
Sbjct: 414  NPTRQRAETETYTYDSSGNELTHVEASGITTTNVYYRASGEED-FPDNPYGFVCK-VKSS 471

Query: 461  RLVAAGD---TPAARLTEYTHTRVPQTGNSYFV------------VQESVTQPDLFST-R 504
             +  A D    P  R T Y +  +P    +               V ++ T  +   T +
Sbjct: 472  TVTPAPDHEPAPTVR-THYRYIEIPPLARTPLARPVTLDEQVLVQVHDAGTPQEREETLQ 530

Query: 505  HTYYDTPVMLVGRLKSTSNTIDELALTSHFTYTVA-------------AGNLVETRRMMG 551
             T Y     L   L+    +   + L    TYT               A  L  T     
Sbjct: 531  STTYQYWTDLNDPLRHGQLSRQAVRLNGATTYTDTDYKRLFGVDFPEPAIQLTTTLSTDF 590

Query: 552  REGQWLESARTLSLVNRRLLSMTRDGGCSLDLAFDVSGRLTAETVSLGKPQQAGRRYAYH 611
               + +   +T +L  + LL  + D   S +  +D  GRL  ET +    +    R  Y 
Sbjct: 591  DGVKKVNIEQTSALTGKLLLLHSSDMEISYE--YDKLGRLVRETTAPRSSEFKAVR-TYR 647

Query: 612  FATPEKRAHLITTDAQNNQVIT---YFDGVGRQVSEAQLIGTNRDQERVTRTW--RYDAL 666
            +       H    DA N + IT     DG+GRQ+ E +   +  +  RV +TW  RY+ L
Sbjct: 648  YFPSAGVGHFSGRDAVNTRGITTRTQIDGLGRQIYEERDNVSETNPTRVEQTWKARYNGL 707

Query: 667  EQLSEVVKHDYLTDGQRSLKSTYSYNHWGNSSRVTRADGSVQIDEYDPL---------LN 717
             +L E  ++DY      +  +TY Y+ WG  S VT  DG     E++P+          N
Sbjct: 708  GELIEETRYDYFEGRSFAYTTTYEYDDWGEQSCVTGPDGVQAHTEFNPIGIAVGHPSPWN 767

Query: 718  LRVEG-----------VEGGERLRRYFNEHNQPVKVERLDAGGATVEVESRTYDGLGRCL 766
              VE            + G    R   N  ++P +   LDA G  +   +  YDG G C 
Sbjct: 768  GLVETRWRQGPGHSPMISGKSETR--INSLDKPAQTASLDAQGQVLATRTYQYDGQGNCT 825

Query: 767  SVLDNMGNKRTEFTYDAFDRLMTTLEIPLDGTPQRLQKTDYAPGTSDAMISALAV----- 821
              +D +  ++T ++YD + R++TT  +P     Q +   +YA  +   + +AL V     
Sbjct: 826  QEVDEL-KRKTLYSYDPWSRMVTT-TLP----DQCVVSREYATHSRSELPTALWVKPASG 879

Query: 822  ---DGKCLGARTYDSLGRLTSQTRGTGQTTTWEYEPGWTEPVAITSPRGHRQTLTYDKEL 878
               D   +G +T+D L RLT    G  ++ T  Y     +P   T+  G    +TY+ + 
Sbjct: 880  SSPDPVLIGTQTFDGLERLTETQTGM-RSETLGYIDDQLQPNTRTTAAG--AVITYEYK- 935

Query: 879  GVPIRREMTGLPVSAYRHDATTSMLTRSETDGLIHEYFQDANGHPEKDIQT--------- 929
                  ++T  P + +  DA ++      +  L+    +  + H E DI           
Sbjct: 936  ----NLQLTDQPTAIHSPDAQSAFDYHPVSARLVKAQNEQGSRHYEYDITNQVRSEQWVD 991

Query: 930  ANGASLTALYSHSPGGRLLHQTAADGQLSTL----EYDIYGRFSRITTGPMVIEQGYDTL 985
              G S    Y  + GG+L  +   +  L+T+    EYD  G  +R   G +     YD L
Sbjct: 992  EQGLSWETQYISTSGGQLRKRLDIN-HLNTVENVYEYDSAGLVTRSVQGSLEATFEYDAL 1050

Query: 986  GRPQDLTTV--YEGTTVVTKVSYDAWGREAERRFEENGVLLQVMTNTYHANSLLATRFLR 1043
             R    T+V     TT++T+++YD   +E  R     G   + +   ++ +  L +R L+
Sbjct: 1051 SRLSKTTSVDTDANTTLITELTYDDQDQEILRTITLPGHSTRTIEQVWYPDGQLKSRHLQ 1110

Query: 1044 DASSRV---VIGETFTYDAFLRLKTYRCEGLEQPQDHLGRGIVGQDFSLDGLNNITGVVT 1100
               + +   ++ E F YD   RL  + C G + P+D  GR I  Q +  D L+NIT  V+
Sbjct: 1111 VEEAGLLNSLLLEAFDYDDRGRLSVHTCSGRDLPKDEAGRAIEQQMYVFDDLDNITLRVS 1170

Query: 1101 TFVDGTQDICERFFTGADPTQLTRLTHT---APPQDVTLTYDAAGNLQAGPSGQVYTYNA 1157
             F  G  ++ E F+   D  +L R+T +    P Q+ T  YD  GN++    GQ+  Y++
Sbjct: 1171 QFSGGASEVNEYFYADDDRCRLVRMTRSLDGGPTQEQTFDYDDNGNMRNDEQGQLLRYDS 1230

Query: 1158 FEQLTGVHAGSDQ--YSYQYDADSRQVVASRGDEPPVRLAYSGEGLELLVEGNKTIRYAN 1215
              +L  V + S Q    YQYD   R + +  G +      Y G+ L   V+      +  
Sbjct: 1231 QSRLLEVRSVSQQPVMQYQYDGHDRLISSQEGTQAKSLRLYQGDELSYTVQSAAQTHFFT 1290

Query: 1216 GDDQVMA--LSGGVDGVQLYANDASGSVRGITAPSEAHVRRHYTPYGDTTISLDDGKARS 1273
              DQV+     G      L   DA+GSV G      A     Y+ YG+        ++  
Sbjct: 1291 AADQVLGQHQPGDPSKNLLLFTDANGSVLG-ECQGAALRAAIYSAYGE--------RSSE 1341

Query: 1274 MADLQLPGINGQRLDVATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNGYGYAACN 1333
               L +   NG+  + ++  Y+LG+G RAY+P LM F   D  SPF  GGVN Y Y   N
Sbjct: 1342 EPLLSVRAFNGEVRESSSGWYLLGNGYRAYNPVLMRFHSPDSFSPFGAGGVNPYCYCLGN 1401

Query: 1334 PTNMMDPSG------------------------LWPT-WLKWAFTGAALAFGVVTL--GA 1366
            P    DP+G                         W T  +  A T  A  F V+T     
Sbjct: 1402 PIRFKDPTGHVSSVSRMKHPDEDRVPGAYKRSKNWVTVAISAAVTVVAAIFAVITWVPTG 1461

Query: 1367 GLAGIAAAGLAVVTSAQIVAV 1387
            GL+G+A A   +   A + AV
Sbjct: 1462 GLSGLALAAAVIANVASVTAV 1482