Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 344 a.a., YD repeat protein from Pseudomonas fluorescens FW300-N2E2

 Score = 77.8 bits (190), Expect = 2e-18
 Identities = 58/176 (32%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 1173 YQYDADSRQVVASRGDEPPVRLAYSGEGLELLVEGNKTIRYANGDDQVMALS---GGVDG 1229
            Y YD   R    +  +   ++  Y    L   ++G         DDQ++A     G V  
Sbjct: 13   YHYDPLDRLSDCAPMNAAAIQRFYCKSRLVTEIQGAVQRSVVQHDDQLLAQQQRQGSVAN 72

Query: 1230 VQLYANDASGSVRGITAPSEAHVRRHYTPYGDTTISLDDGKARSMADLQLPGINGQRLDV 1289
              L A D   SV   T  ++ H    YTPYG   +  D G         L G NG+R D 
Sbjct: 73   AILLATDLRRSVLH-TLDAQTHQPLIYTPYGH--LPADSGLT------SLLGFNGERRDP 123

Query: 1290 ATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNGYGYAACNPTNMMDPSGLWP 1345
             +  Y+LG+G RA++P LM F   D LSPF  GG+N Y Y   +P N+ D +G  P
Sbjct: 124  VSGHYLLGNGYRAFNPVLMRFNSPDSLSPFGRGGLNAYVYCLGDPVNLEDRTGHMP 179