Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 336 a.a., YD repeat protein from Pseudomonas fluorescens FW300-N2E2

 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 56/173 (32%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 1173 YQYDADSRQVVASRGDEPPVRLAYSGEGLELLVEGNKTIRYANGDDQVMALS---GGVDG 1229
            Y YD   R    +   +   +  Y  E L   ++G         D+Q++A      G  G
Sbjct: 12   YHYDPLDRLTDCTPPTQARAQRFYLKERLTSEIQGPVERSIFQQDEQLLAQQQRQDGAVG 71

Query: 1230 VQLYANDASGSVRGITAPSEAHVRRHYTPYGDTTISLDDGKARSMADLQLPGINGQRLDV 1289
              L A D   SV      ++ H    YTPYG         +      L L G NG+R D 
Sbjct: 72   TTLLATDQQRSVLHALDATQPHPLA-YTPYGH--------RPAENGLLSLLGFNGERPDP 122

Query: 1290 ATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNGYGYAACNPTNMMDPSG 1342
             T  Y+LG+G R ++P LM F   D LSPF +GG+N Y Y   +P N  DP+G
Sbjct: 123  VTGHYLLGNGYRVFNPGLMRFNSPDSLSPFGKGGLNAYTYCDGDPLNRRDPTG 175



 Score = 29.3 bits (64), Expect = 7e-04
 Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 25/133 (18%)

Query: 139 PYKITAIQFENGERLRFSYLQGGPLERIQNDQGQDLLVLTYMGALLVEADVLIDGGRYAR 198
           P +  A +F   ERL  S +QG P+ER    Q + LL           A      G    
Sbjct: 26  PTQARAQRFYLKERLT-SEIQG-PVERSIFQQDEQLL-----------AQQQRQDGAVGT 72

Query: 199 TRIAYGNVNNQLVRVTVPYDRTQAPETAAYTFVYHRPFRNGLIAISEVN----SPMGGNT 254
           T +A     +Q   V    D TQ P   AYT   HRP  NGL+++   N     P+ G+ 
Sbjct: 73  TLLA----TDQQRSVLHALDATQ-PHPLAYTPYGHRPAENGLLSLLGFNGERPDPVTGHY 127

Query: 255 LISYEENGHQYAN 267
           L+    NG++  N
Sbjct: 128 LLG---NGYRVFN 137