Pairwise Alignments

Query, 1589 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

Subject, 371 a.a., hypothetical protein from Pseudomonas syringae pv. syringae B728a

 Score = 89.7 bits (221), Expect = 5e-22
 Identities = 77/232 (33%), Positives = 108/232 (46%), Gaps = 29/232 (12%)

Query: 1173 YQYDADSRQVVASRGDEPPVRLAYSGEGLELLVEGNKTIRYANGDDQVMA--LSGGVDGV 1230
            Y YD   R    +   +      Y+GE L   ++G +         Q++A  L  G + V
Sbjct: 7    YTYDPLDRVSTLTPLAQAVANRFYNGEQLMTELQGGRQRTCVRAGGQLLAQQLREGDEVV 66

Query: 1231 Q-LYANDASGSVRGITAPSEAHVRRH--YTPYGDTTISLDDGKARSMADLQLPGINGQRL 1287
              + A D + SV      SEA  +    YTP+G              A  +LPG NG++ 
Sbjct: 67   TTMIAGDRNNSV---LHASEAGQQSDVVYTPFGH--------HQAVQASAELPGFNGEQP 115

Query: 1288 DVATNLYVLGSGVRAYDPRLMIFLQADPLSPFDEGGVNGYGYAACNPTNMMDPSGLWPTW 1347
            D  T  Y+LG+G RAY+P LM F   D +SPF +GG+N Y Y   +P N +DP+G +   
Sbjct: 116  DPLTGHYLLGNGYRAYNPVLMRFNSPDSMSPFGKGGLNAYAYCVGDPVNRVDPTGHFSAL 175

Query: 1348 LKWAFTGAALAFGVVTLGAGLAGIA-AAGLAVVTSAQIVAVVGATMGVIGNI 1398
                   AAL  G+V   AG   IA AAGL    S      +G T+ V+G+I
Sbjct: 176  -------AALISGIVLSAAGAGAIATAAGLKDSDS-----TLGTTLTVVGSI 215