Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 306 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  144 bits (363), Expect = 3e-39
 Identities = 90/308 (29%), Positives = 160/308 (51%), Gaps = 14/308 (4%)

Query: 1   METRAHHVMIGLFSVIVVVGAMLFGLWLAKSSVDSAFQDYEVIFNEAVSGLSQGSAVQYS 60
           METRA ++++G+F+++ V GA+ F LW A      A   Y+V F+  V GLS  S V ++
Sbjct: 1   METRASYILVGVFTLLAVTGALAFVLWTAGRGEGKAMAAYDVHFSGNVMGLSVASDVFFN 60

Query: 61  GIKVGDVTSLRLDPKDPRRVLARIRLAGQTPIKEDTQAKLALTGITGTSIIQLSGGTPQS 120
           G+KVG V  + L+P DP +V  RI +   TP++ED+ A L   G+TG S++Q++GG+P +
Sbjct: 61  GVKVGAVKQITLNPDDPAKVKVRIEIDATTPVREDSVASLEGRGLTGVSVVQITGGSPHA 120

Query: 121 AELKGKNGELPQIIASPSPIARLLNNSNDLMTSINLLLHNANHMFSRENVERLSNTLDNL 180
             L G  GE+P I +  S +  L      L+ S N L++    + + EN   L++T   L
Sbjct: 121 PLLVGTAGEVPVIASRASRLEELFAGMPQLVGSGNELVNRLADVLNAENRAALASTFHAL 180

Query: 181 QQTTGAIADQRGDIKVVMQQLMQVSKQ---ASAALEQTTVLMRNANGLLNEQGKQAFGSA 237
              T  +A +   +  ++  +   +++   ASA LE     MR+             G  
Sbjct: 181 DTVTARMAARADSLDRIITNMDTTTRRLANASAGLETLAGDMRDLTR----------GDM 230

Query: 238 EQAMKSLEQSTATLNTLLTNNKDSVNS-GMQGLNELAPAVRELRETLGSLRAISRRLEAN 296
             ++ ++  +   L+ LL   +  V     +GL ++   + E R  + +L  +++R+E++
Sbjct: 231 RDSIVAVGNTARRLDALLAAAEPGVTGFSTEGLEDMRRLLIESRHLVTTLNRMAQRMESD 290

Query: 297 PSGYLLGS 304
           P  ++ G+
Sbjct: 291 PRRFMFGN 298