Pairwise Alignments

Query, 409 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 408 a.a., nucleoside recognition domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  452 bits (1163), Expect = e-132
 Identities = 243/412 (58%), Positives = 304/412 (73%), Gaps = 7/412 (1%)

Query: 1   MLNGLWLGFFVVAMVSALAQWLVGGNAGIFAAMVESIFAMAKLSVEVMVLLFGTLTLWLG 60
           MLN +W  FFV A+V A+A  L  G   I +A+V+++FA AKL+ E+ + L G L+LW+G
Sbjct: 1   MLNRVWFAFFVTALV-AIAISLFQGQWQILSAVVDALFASAKLAAEIALGLIGVLSLWMG 59

Query: 61  FLRIAEKAGIVDWLAKALGPLFRRLMPEVPAGHPAIGLITLNFAANGLGLDNAATPIGLK 120
            +R+ EKAG+V   A+   PL  RLMPEVP GHPA G +T+N  AN LGLDNAATP+GLK
Sbjct: 60  LMRVGEKAGVVGLFARLFEPLLSRLMPEVPRGHPAFGSVTMNLTANVLGLDNAATPLGLK 119

Query: 121 AMKALQELNPIPNTASNAQILFLVLNASSLTLLPVTIFMYRAQQGAADPTLVFLPILLAT 180
           AM+ LQ LNP+ + A+NAQILFLVLN SS+TL+PVT+F+YRAQQGA  P  +FLPILLAT
Sbjct: 120 AMQDLQSLNPVKSVATNAQILFLVLNTSSVTLVPVTVFLYRAQQGAESPADIFLPILLAT 179

Query: 181 SASTLVGLLSVAIMQRLRLWDPVVLAYLIPGALVLGGFMAL---LATLSATALAGLSSIL 237
           +ASTLVG+L VAI QR+ L + V+L Y    AL+L    AL   L TL+ +A+   S+ L
Sbjct: 180 TASTLVGVLVVAIYQRISLLNSVLLGY---AALMLAAVSALVFYLGTLTVSAIGEFSTAL 236

Query: 238 GNLTLFGLIMLFLVIGALRKVKVYEAFVEGAKEGFDVAKNLLPYLVAMLCAVGVLRASGA 297
           GN  L  LI  F+++  LRKV VY+ FV GAKEGF  A  L+PYL+AML A+ +LRASGA
Sbjct: 237 GNGILVLLIFSFILVAGLRKVAVYDEFVGGAKEGFTQAVQLIPYLLAMLLAIALLRASGA 296

Query: 298 LDFGLEGIRHVVAWTGMDTRFVDALPTAMVKPFSGSAARAMLIETMQTQGVDSFPALVAA 357
           LD+ L  I  +V   G DTRFVDALPTA++KPFSGS ARAM++ETMQ  GVDSF   +AA
Sbjct: 297 LDYLLGVIAALVNLVGGDTRFVDALPTALMKPFSGSGARAMMLETMQHYGVDSFAGRLAA 356

Query: 358 TIQGSTETTFYVLAVYFGSVGIQRARHAVGCALLAEFAGVVAAIAVCYWFFG 409
            +QGSTETTFYVLAVYFG+VGI+  RHA+ C L A+FAG+ AAI VCY F+G
Sbjct: 357 VVQGSTETTFYVLAVYFGAVGIRNGRHALVCGLSADFAGICAAIWVCYQFYG 408