Pairwise Alignments

Query, 409 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 410 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  401 bits (1031), Expect = e-116
 Identities = 196/408 (48%), Positives = 288/408 (70%)

Query: 1   MLNGLWLGFFVVAMVSALAQWLVGGNAGIFAAMVESIFAMAKLSVEVMVLLFGTLTLWLG 60
           +LN +W+ FFV+A + AL + +  G+  IF A++ S F  +K + E+ + L G L LWLG
Sbjct: 2   VLNYIWIAFFVIAFIIALIKVIFLGDTEIFTAIMNSTFDSSKTAFEISLGLTGVLALWLG 61

Query: 61  FLRIAEKAGIVDWLAKALGPLFRRLMPEVPAGHPAIGLITLNFAANGLGLDNAATPIGLK 120
            ++I E +G+++ LA+ L P+  RL P++P GHP +G I +N +AN LGLDNAATP+GLK
Sbjct: 62  IMKIGENSGLINALARFLSPVLCRLFPDIPKGHPVLGSIFMNMSANMLGLDNAATPLGLK 121

Query: 121 AMKALQELNPIPNTASNAQILFLVLNASSLTLLPVTIFMYRAQQGAADPTLVFLPILLAT 180
           AMK LQELNP  +TASN  I+FLV+N S L ++P++I +YRAQ GAA PT VF+PILL+T
Sbjct: 122 AMKELQELNPKKDTASNPMIMFLVINTSGLIIIPISIMVYRAQMGAAQPTDVFIPILLST 181

Query: 181 SASTLVGLLSVAIMQRLRLWDPVVLAYLIPGALVLGGFMALLATLSATALAGLSSILGNL 240
             STLVG+++V+I Q++ L +  +L  +    L   G + L   +S   +   S+++ N+
Sbjct: 182 FISTLVGVIAVSIAQKINLINKPILILMGVICLFFSGLIYLFLNISREEMGTYSTLIANI 241

Query: 241 TLFGLIMLFLVIGALRKVKVYEAFVEGAKEGFDVAKNLLPYLVAMLCAVGVLRASGALDF 300
            LFG+I+LF++ G  +K+ VY++FVEGAKEGF  A  ++PYLVA L  + V R +GA+DF
Sbjct: 242 LLFGVIILFILTGVRKKINVYDSFVEGAKEGFTTAVRIIPYLVAFLVGIAVFRTAGAMDF 301

Query: 301 GLEGIRHVVAWTGMDTRFVDALPTAMVKPFSGSAARAMLIETMQTQGVDSFPALVAATIQ 360
            + GI +VV   G+DT FV ALPTA++K  SGS A  ++I+TM+  G DSF   ++  ++
Sbjct: 302 LVGGIGYVVDLCGVDTSFVGALPTALMKSLSGSGANGLMIDTMKEMGPDSFVGRMSCVVR 361

Query: 361 GSTETTFYVLAVYFGSVGIQRARHAVGCALLAEFAGVVAAIAVCYWFF 408
           G+++TTFY+LAVYFGSVGI + R+AV C L+A+F+G++AAI + Y FF
Sbjct: 362 GASDTTFYILAVYFGSVGISKTRNAVTCGLIADFSGIIAAILISYLFF 409