Pairwise Alignments

Query, 318 a.a., D-alanine--D-alanine ligase from Pseudomonas simiae WCS417

Subject, 1081 a.a., carbamoyl-phosphate synthase large subunit from Methanococcus maripaludis S2

 Score = 52.0 bits (123), Expect = 7e-11
 Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 76  ILHGRGGEDG-------SMQGLLECAGIPYTGSGVLASALAMDKLRTKQVWHSLGIPTPR 128
           IL   GG+ G       S +G+LE  G+   GS       + D+    +    +  P  +
Sbjct: 85  ILPTMGGQTGLNLAMELSKRGILEKHGVELLGSTESVIETSEDRDLFNKAMEEINQPIAK 144

Query: 129 HSVLCSEDDCISAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDAWKAASTYD--SQVL 186
            + + S ++ I A KELG P IV+PA      G    N+  ELI+  K    Y    QVL
Sbjct: 145 SAAVHSVEEAIGATKELGYPAIVRPAFTLGGTGGGIANNEEELIEITKKGLKYSMIKQVL 204

Query: 187 VEQWIQG-PEYTIATLR 202
           ++Q + G  EY    +R
Sbjct: 205 IDQSLLGWKEYEYEVMR 221



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 94  AGIPYTGSGVLASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCISAAKELGLPLIVKP 153
           +G+   G+   +  LA D+ +   V   L IP    +   SE+  +   + +G P +V+P
Sbjct: 665 SGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALKVVERIGYPALVRP 724

Query: 154 AHEGSSIGMAKVNSAAELIDAWKAA--STYDSQVLVEQWIQ 192
           ++      M  V +  +L D  + A   + D  +L++++++
Sbjct: 725 SYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLE 765