Pairwise Alignments

Query, 481 a.a., UDP-N-acetylmuramate--alanine ligase from Pseudomonas simiae WCS417

Subject, 465 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  152 bits (385), Expect = 2e-41
 Identities = 125/470 (26%), Positives = 217/470 (46%), Gaps = 37/470 (7%)

Query: 19  IHFVGIGGVGMCGIAEVLLNLGYQVSGSDLKE-SPVTERLKTFGAQIFIGHRAENAAEA- 76
           +H +GI G  M G+A +    G++V+GSD     P++ +L+  G ++  G       +A 
Sbjct: 3   VHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGDAG 62

Query: 77  ---DVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAE-LMRYRHGIAVAGTHGKTTTTS 132
              D++V+ +A++  NP V   L   IP     + L + ++  R  +AV+GTHGKT+T+S
Sbjct: 63  SYPDIVVIGNAMSRGNPCVEAVLNLGIPYTSGPQFLVDHILPERWVLAVSGTHGKTSTSS 122

Query: 133 LIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRYLIAEADESDAS-------FLHLQPL 185
           ++A +    G  P F+IGG     G +A+LG S + + EADE D++       F+H  P 
Sbjct: 123 MLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEADEYDSAFFDKRSKFVHYHPR 182

Query: 186 VAVVTNIDEDHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCLDDPVVREILPL-VKRPT 244
             V+ N++ DH A    D   ++K F   +  +P  G  +   D   V++ + +      
Sbjct: 183 TLVINNLEFDH-ADIFADLAAIQKQFHHQIRTVPGQGKVIWPADSHAVKQTIDMGCWSEQ 241

Query: 245 VTYGFSEDA---DVRAINVRQEGMQTFFTVLRPDREPLDVSVNMPGNHNVLNSLATICIA 301
            TY  SE       +A++      + FF      +  LD +  + G HN+ N++  I  A
Sbjct: 242 ETYHSSEVTKGWHAKALSDDCHEFEVFFD--GQSQGVLDWA--LIGQHNIENAVMAIAAA 297

Query: 302 TDEGVSDEAIVEGLSRFAGVGRRFQVYGQLPVDGGDVMLVDDYGHHPTEVAAVIKAVRGG 361
              GV+  A ++ L+RF    RR ++   +      V + DD+ HHPT +A  IK +R  
Sbjct: 298 RHVGVAPSAAIDALARFVPPKRRLELLDTV----NGVSVYDDFAHHPTAIATTIKGMRAK 353

Query: 362 WPERRLVMVYQPHRYSRTRDLYDDFVNVLADANVLLLMEVYPAGEEPIPGADSRKLCNSI 421
             + ++ +V +P   +    ++ D           L   +  A E  +  AD+       
Sbjct: 354 VGQTKITIVLEPRSNTMKSGVHKD----------TLAHSMLQADEAFLYQADTIDWNMKE 403

Query: 422 RQRGQLDPIYIERGV-DLAPIVKPLLRAGDILLCQGAGDIGGLAPKLLAS 470
                + P+ +   + D+   V    + GD ++    G  GGL  KLLA+
Sbjct: 404 AMEAAVIPVTVLHQIDDVVAKVAASAKPGDTIVVMSNGGFGGLHKKLLAA 453