Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Pseudomonas fluorescens FW300-N2E2

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 90/323 (27%), Positives = 143/323 (44%), Gaps = 44/323 (13%)

Query: 28  VSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVADSTLPQLLVADTRL 87
           +++DSRN++ G LF+A+ G RFDG  ++ +   +GA  A V   VA +T+  L + D  L
Sbjct: 21  LALDSRNVRAGDLFLAVPGARFDGRAHIADALKRGA--AAVAYEVAGATV--LPITDVPL 76

Query: 88  -----ALGQLGALNRAAFTNP-----VAAITGSSGKTTVKELLAGVLRTRGPVHATRGNL 137
                   QL  +    + +P     +  +TG++GKT+V +L+A  L   G      G L
Sbjct: 77  IPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCGIVGTL 136

Query: 138 NNDFGAPL---------------TLLELAPEHTAAVI------ELGASRVGEIAYTVALT 176
            N F   L               TL +L      AV        L   RV  +A+ VA  
Sbjct: 137 GNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVA-- 194

Query: 177 KPHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAAGR 236
                V+ N    H+   G  +   EAK ++    D     V+NLDD+            
Sbjct: 195 -----VLTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLK-CRVINLDDEFGRQLAAEKRES 248

Query: 237 KVLTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAA 296
           +++T+++ +A+A  +      +  G  + TL TPQG  H++  LLG  N++N LAA  A 
Sbjct: 249 RLITYSLEDASAYLYVRQAQFNDEGVRA-TLVTPQGEHHLRSTLLGRFNLSNVLAAIGAL 307

Query: 297 YALGVSLFGIATGLGAVQPVKGR 319
             L  +L  +   L  ++   GR
Sbjct: 308 LGLDYALDEVLKVLPKLEGPAGR 330