Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

 Score = 54.7 bits (130), Expect = 6e-12
 Identities = 76/300 (25%), Positives = 119/300 (39%), Gaps = 23/300 (7%)

Query: 104 VAAITGSSGKTTVKELLAGVLRTRG--PVHATRGNLNNDFGAPLTLLEL------APEHT 155
           V A++G+ GKTT   ++A VL   G  P     G L N FG    L E       A E+ 
Sbjct: 105 VIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGN-FGISARLGESMFFVVEADEYD 163

Query: 156 AAVIELGASRVGEIAYTVALTKPHVVVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASG 215
           +A  +    R   + Y      P  +V+NN    H   F   E I      ++  +  +G
Sbjct: 164 SAFFD---KRSKFVHY-----HPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNG 215

Query: 216 IAVLNLDDKAFETWRVRAAGRKVLTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEH 275
             +    D+A      R    +           ++ A  IT D  G     L   +    
Sbjct: 216 RILAPKQDEALADVLQRGCWSET---EFSGEQGEWQAEKITAD--GSQFHVLLKGERVGQ 270

Query: 276 VQLNLLGNHNVANALAAAAAAYALGVSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDT 335
           V  +L+G+HNV+NAL A AAA  +GV+       LG     K R   +   NG+ V DD 
Sbjct: 271 VNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDD- 329

Query: 336 YNANQSSICAAIDLLKSFEGRKVLVLGDIAELGDWAEQSHREVGAYAAGKVDALYAVGPN 395
           +  + ++I   +  L++  G K ++              H+E  A +    D++Y   P+
Sbjct: 330 FAHHPTAIELTLGGLRNKVGDKKIIAVLEPRSATMKLGVHKETLAASLHSADSVYLYQPS 389