Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

 Score = 75.1 bits (183), Expect = 5e-18
 Identities = 80/321 (24%), Positives = 128/321 (39%), Gaps = 37/321 (11%)

Query: 28  VSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVAD--------STLPQ 79
           + +DSR IK G  FVA+ G   DG  ++++  A+GA   L +             + +P 
Sbjct: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106

Query: 80  LLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAGVLRTRGPVHATRGNLNN 139
           + +A+    L +L         N +  +TG++GKTT+ +L+A  L   G   A  G   N
Sbjct: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166

Query: 140 DFGAPLTLLELAPEHTAAVIELGASRVGEIA-----YTVALTKPHVV------------- 181
            F   L  LE A   T   +++ A+ + ++A     YT   T  H +             
Sbjct: 167 GF---LNALEPAANTTGNALQIQAT-LRDLAERGAQYTALETSSHGLVQGRVKKLHFVAG 222

Query: 182 VINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETW---RVRAAGRKV 238
           V +N    H+   G  E    AK  +     A   A++N+DD     W     +A G  +
Sbjct: 223 VFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSL 281

Query: 239 LTFAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYA 298
           +T    N A    A  +     G  +    +  G   +   L+G  N  N L A A   +
Sbjct: 282 VTKP--NTAQAIWAREVAYAESGI-TLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 338

Query: 299 LGVSLFGIATGLGAVQPVKGR 319
           LG     +      ++PV GR
Sbjct: 339 LGFEKSALLATAPKLRPVLGR 359