Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

 Score =  333 bits (855), Expect = 5e-96
 Identities = 194/451 (43%), Positives = 269/451 (59%), Gaps = 6/451 (1%)

Query: 1   MLKAMKFSELTQALSARVLSSDCSFDGVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAA 60
           M++ M  S+L+  L+AR++  D +   VS DSR I    LFVAL G RFD HD+ ++   
Sbjct: 1   MIRVM-LSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVT 59

Query: 61  KGAVGALVQRAVADSTLPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELL 120
            GAV  LV+R + D+   QL+VADT+ ALGQLG+   A    P  AITGS GKTTVKE++
Sbjct: 60  GGAVALLVEREL-DAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMV 118

Query: 121 AGVLRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPHV 180
           A +L  +G V  T+GN NND G PLTLL    E   AVIELGA+ VGEIAYT AL KP V
Sbjct: 119 ASILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDV 178

Query: 181 VVINNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAAGRKVLT 240
            ++NN   AH+  FG  + +  AKGEI +GL A  +A++NLD    + W+   A + V T
Sbjct: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKT 238

Query: 241 FAVLNAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYALG 300
           F+  +  ADF+  ++ ++A G  SFTL TP G   V+L ++G HNVANALAAAA +  +G
Sbjct: 239 FSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMG 298

Query: 301 VSLFGIATGLGAVQPVKGRTVAQLATNGMRVIDDTYNANQSSICAAIDLLKSFEGRKVLV 360
            SL  I  GL  +  VKGR       + + +IDD+YNA+  ++ AA++LL SF   + L+
Sbjct: 299 ASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVRWLI 358

Query: 361 LGDIAELGDWAEQSHREVGAYAAGKVDALYAVGPNMAHAVSVFGPGARHFVTQAEL---I 417
           LG++AELGD +   H++VG +AA             A  +S    G  HF T  ++   I
Sbjct: 359 LGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQG-HHFATHQDMMTFI 417

Query: 418 QALTAAEHDKHTTILIKGSRSAVMENVVAAL 448
           +     +  +   +L+KG+ SA M  + AAL
Sbjct: 418 EQHIEQQQGRTQVLLVKGANSAGMSKIAAAL 448