Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 477 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase from Sinorhizobium meliloti 1021

 Score =  206 bits (525), Expect = 1e-57
 Identities = 149/461 (32%), Positives = 219/461 (47%), Gaps = 25/461 (5%)

Query: 8   SELTQALSARVLSS-DCSFDGVSIDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGA 66
           S+L  A++ R + +      G+SIDSR I  G+ F A+ G R DGHDY     A GA   
Sbjct: 8   SDLLAAMNGRPVGNLPEGITGISIDSRTIGDGEAFFAIRGDRVDGHDYAGIALANGAALL 67

Query: 67  LVQRAVADST----LPQLLVADTRLALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAG 122
           +V  A   +      P ++V D   A+ +LG + R      + A+TGS GKTT KE+L  
Sbjct: 68  VVSEAKLPALGRLIAPMIVVDDVLEAMIRLGCVARDRSAAKIIAVTGSVGKTTTKEMLRH 127

Query: 123 VLRTRGPVHATRGNLNNDFGAPLTLLELAPEHTAAVIELGASRVGEIAYTVALTKPHVVV 182
           VL   G VHA+  + NN +G PLTL  +       V E+G +  GEI     + +PHV V
Sbjct: 128 VLSPLGRVHASVASFNNHWGVPLTLARMPETTDFGVFEIGMNHAGEILPLTRMVRPHVAV 187

Query: 183 INNAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWR--VRAAGRKVLT 240
           + +   AH+G F   ++I  AK EI EG+   G AV+N D   ++       AAG   + 
Sbjct: 188 VTSIAAAHLGNFTSLDEIAAAKAEIFEGVVNGGHAVINRDSAQYDLLERAAAAAGVSHVH 247

Query: 241 FAVLNAAADFHASNITVDARGCPSFTLHTPQGNE--HVQLNLLGNHNVANALAAAAAAYA 298
               N  ++F  +     A G     L    G     + +   G H   NALAA AAA  
Sbjct: 248 SFGANPRSEFRLAEF---AGGAEGSVLWAGIGGRTLEIAIGAPGRHIAENALAAIAAATL 304

Query: 299 LGVSLFGIATGLGAVQPVKGRTV---AQLATNGMRVIDDTYNANQSSICAAIDLLKSFE- 354
            G     +A     +QP KGR +    ++ T  + VID++YNAN +S+ AAI LL+  E 
Sbjct: 305 AGADTDRVAASFATMQPEKGRGLRHRLRIGTGHLTVIDESYNANPASMRAAISLLRDAEP 364

Query: 355 ---GRKVLVLGDIAELGDWAEQSHREV-GAYAAGKVDALYAVGPNMAHAVSVFGPGARHF 410
              GR++ VLGD+ E+G+ +   H  + G      +  ++  GP MAH      P     
Sbjct: 365 APGGRRIAVLGDMLEMGEHSAAVHAALAGPVVEAGIADVWLAGPEMAHLRDALPPEVS-- 422

Query: 411 VTQAELIQALTA---AEHDKHTTILIKGSRSAVMENVVAAL 448
           V   +++  LTA           +++K S+      +V AL
Sbjct: 423 VVHRDVVGDLTAYALGAVSAGDVVMVKSSKGTGCAKIVQAL 463