Pairwise Alignments

Query, 456 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Pseudomonas simiae WCS417

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score = 87.8 bits (216), Expect = 7e-22
 Identities = 96/330 (29%), Positives = 135/330 (40%), Gaps = 30/330 (9%)

Query: 30  IDSRNIKPGQLFVALTGPRFDGHDYLNEVAAKGAVGALVQRAVAD-----STLPQLLVAD 84
           IDSR +  G LF+A+ G + DG  YL+   AKGA  ALV     D     S  P L +A 
Sbjct: 25  IDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALVHTDDPDEHGKVSYEPGLCIAF 84

Query: 85  TRL------ALGQLGALNRAAFTNPVAAITGSSGKTTVKELLAGVLRTRGPVHATRGNLN 138
            +L         Q  AL R      V  +TG++GKT+V +L+A +    G   A  G L 
Sbjct: 85  FQLNRQVSAVARQYYALTRGKLR--VVGVTGTNGKTSVSQLIAQLTELLGDKAAVMGTLG 142

Query: 139 N-------DFG-----APLTLLELAP-EHTAA-VIELGASRVGEIAYTVALTKPHVVVIN 184
           N       D G     A   + +L   EH  A V  +  S  G +   V      V V  
Sbjct: 143 NGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVSSHGLVQGRVEAVPFEVAVFT 202

Query: 185 NAGTAHVGEFGGPEKIVEAKGEILEGLDASGIAVLNLDDKAFETWRVRAAGRKVLTFAVL 244
           N    H+   G  +    AK  +     +    V+NLDDK  E W     G       + 
Sbjct: 203 NLSRDHLDYHGDMDNYAAAKRRLF-AFGSLSARVINLDDKVGEQW-FDGMGCATGFSCLG 260

Query: 245 NAAADFHASNITVDARGCPSFTLHTPQGNEHVQLNLLGNHNVANALAAAAAAYALGVSLF 304
           +A AD+   N      G  S  L  P G + ++  LLG  N++N LAA  A   LG  + 
Sbjct: 261 HAKADWRFENAHFHHAGF-SANLVWPGGQKPLECRLLGAFNLSNLLAALCAMAQLGYQVP 319

Query: 305 GIATGLGAVQPVKGRTVAQLATNGMRVIDD 334
            +      ++ V GR       +G+ ++ D
Sbjct: 320 DLVAAAAKLEAVPGRMECFPRKDGVSLVVD 349