Pairwise Alignments

Query, 603 a.a., hypothetical protein from Pseudomonas simiae WCS417

Subject, 601 a.a., penicillin-binding protein activator from Vibrio cholerae E7946 ATCC 55056

 Score =  212 bits (540), Expect = 3e-59
 Identities = 165/596 (27%), Positives = 286/596 (47%), Gaps = 21/596 (3%)

Query: 6   RLLSALCLAALLAACASSPSS-SLGDLPRTPDASIEQLLEQATTAKTPEKAALLRLSAAD 64
           RLL+ + L+ +L+AC++ PSS  + D+   P  + +  L +A  ++  ++   L + A  
Sbjct: 11  RLLTPIALSIVLSACSTQPSSPDVVDITAQPLLTAQTYLMRADASQGNQQNDWL-IMALK 69

Query: 65  MAYKQNNPGRSSQILAQVSLDVLKPAAQVFASTLAAELAMARNQPKAALTALNHPSLQSL 124
            A ++NNP ++  ++ +++   L P  Q     L A+L     Q + AL  L   S Q+ 
Sbjct: 70  AAIEENNPDQAQLLIMRLAKQPLTPTQQAQWQLLRAQLLANTEQYQEALEQL---SFQAN 126

Query: 125 KDLPPEQQIRTASVHARAYEADGQTLAAARERVAMAPLLTGDAAKSNHEAIWVLIAALPA 184
             LP  Q  +   + A  + A  ++  + RE VA+  L +    ++  + IW  +    A
Sbjct: 127 WSLPQVQWQQYHQLRADIFTALDRSFDSTRELVALYGLSSNKDKEALADQIWANLNHYSA 186

Query: 185 EQL-QASGNPT---LDGWITLAQAVKGAGT-LEQQQAAIDTWRAQNPGHPAAVQLPTPLT 239
            ++ + S  P    LDGW+ LA  +K  G+ L Q +  ++ W A+NP HPAA+  P  +T
Sbjct: 187 SKIIKLSTEPDEAQLDGWLQLAIYMKTLGSDLPQLKNTLEKWLAENPQHPAAIYTPKAIT 246

Query: 240 KLKELASQPLTKIALLLPQDGPLASVGKALREGFMAAHYQ-AEQAGQKPPVIEFYDSSRL 298
            +  L     T  ALLLP  G  A   + +R+GF+ A    A++       I   ++  L
Sbjct: 247 DILALEIVKPTNTALLLPLTGKFAKQAQFIRDGFVFAMMNDADRQTNATLTIIDTNAETL 306

Query: 299 TSLDDFYAKAQAAGVQLVVGPLEKPLVKQLS----ARPQLPITTLALNYSESDRSPAQLF 354
            S+D      Q   +  VVGPL K  +++L     +R Q+ I TLALN  +   + A   
Sbjct: 307 ESVDAILTSKQ---IDFVVGPLIKGNIEKLQQFQQSRGQM-IPTLALNIPDQIDTTAGAC 362

Query: 355 QFGLAAEDEAREVSRRARADGLHRAAAMVPRGEWGERVYKAFRQDWEANGGQVMGVEYVD 414
              L+ E E  + ++     G      + P+  +GERV +AF ++W       + V    
Sbjct: 363 YLALSPEQEVAQAAKHLFTQGYRYPLILAPQNAYGERVVEAFNEEWRRYSKNKVAVNLFG 422

Query: 415 QPVALAQQIADLFQLRKSEGRAKSLQSTVGTDVAAQPSRRQDIEFIFLAVTPQLAQQIKP 474
               L + I  +F L+ S+     ++S +G  + +QP  R+DI+ +++         IKP
Sbjct: 423 DKRQLQRNINSIFGLQDSQQNIAQMESLLGMGLESQPRSRRDIDAVYIVANSSELTLIKP 482

Query: 475 TLNFQYAGDV-PVYATSHVFSASGDKNQYLDMTNVMFCETPWLLNTTDPLRNQVAAQWPQ 533
            +      D  P    S+  S +G + QY D++ V + + P L+     ++ Q+   WP+
Sbjct: 483 FIEVAINPDTRPPKLFSNSNSNTGGR-QYEDLSGVTYSDIPLLIQPAPSIKEQLTQIWPE 541

Query: 534 ANGSLGRLYAMGVDAYRLAPRLGQLKALPDTRVDGLSGSLGISTTQRVDRQMPWAK 589
           ++ +  RL A+G+DAYRL   L Q+K +    +DG +G L I     V R++ WA+
Sbjct: 542 SSNAERRLQALGMDAYRLMVELPQMKIVEGYTIDGQTGVLSIDEQCVVQREISWAE 597