Pairwise Alignments

Query, 448 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 470 a.a., Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains from Pseudomonas stutzeri RCH2

 Score =  288 bits (737), Expect = 3e-82
 Identities = 166/409 (40%), Positives = 240/409 (58%), Gaps = 25/409 (6%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYTVATANSAAQADALMQRQVFDLCFLDLRLGEDNGLDV 70
           IL+V+DE+ I    R  LE   Y V+ A S  +A        FDL   DLRL    G ++
Sbjct: 4   ILIVEDETIIRSALRRLLERNQYEVSEAGSVQEAQERYSIPGFDLIVSDLRLPGAPGTEL 63

Query: 71  LAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLS 130
           +      A    V+I+T+++++ +AVD+++ GA DY+ KP   D++    A+ L   Q S
Sbjct: 64  IKL----AEGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQTVARILSDHQQS 119

Query: 131 ARLEALEGEVRQPKD--------GLDSHSPSMMVVLETARQVAGTDANILILGESGTGKG 182
           A ++A                  G+  H   M  +    R+VA TD+N+LI GESGTGK 
Sbjct: 120 AAVQAQPARSASATAAGSGRDDIGIIGHCAPMQDLFGKIRKVAPTDSNVLIQGESGTGKE 179

Query: 183 ELARAIHGWSKRSKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGT 242
            +ARA+H  S+R+K   +++NC ++   L+ESELFGH +GAFTGAS    G V  ADGGT
Sbjct: 180 LVARALHNLSRRAKAPMISVNCAAIPETLIESELFGHEKGAFTGASAGRAGLVEAADGGT 239

Query: 243 LFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFRE 302
           LFLDEIG+ PL  Q +LLR +Q+ E  RVG   +++ DVR++AAT+ +L+ + + G+FRE
Sbjct: 240 LFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKTGQFRE 299

Query: 303 DLLYRLNVITLHLPPLRERSEDILTLADRFLARFVKEYARPARGFSDEAREALLNYRWPG 362
           DL YRL+VI L LPPLRER  D+L +A  FLAR  +        FS +A +A+ +Y WPG
Sbjct: 300 DLYYRLHVIALKLPPLRERGSDVLEIAKAFLARQGERMGSDDLHFSRDAEQAIRHYSWPG 359

Query: 363 NIRELRNVVERASIICPQEKVEITHLGMAEQPGNNAPRIGAALSLDQLE 411
           N+REL N +ERA+I             ++E P  +A  +G  + LD+L+
Sbjct: 360 NVRELENAIERAAI-------------LSESPEIDAELLGIDIELDELD 395