Pairwise Alignments

Query, 448 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 455 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  277 bits (709), Expect = 4e-79
 Identities = 173/452 (38%), Positives = 248/452 (54%), Gaps = 24/452 (5%)

Query: 13  LVDDESAILRTFRYCLEDEGYTVATANSAAQADALMQRQVFDLCFLDLRLGEDNGLDVLA 72
           +V+D +++   +R  L      +    +   A   + R+  DL  LDLRL +  G+DVL 
Sbjct: 1   MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLY 60

Query: 73  QMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLSAR 132
            ++ ++P + +V +TAH ++DTAV+A++ GA D+L+KPC  D+LR+     +   + +++
Sbjct: 61  AVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAI---RKASK 117

Query: 133 LEALEGEVRQPKDGLDSHSPSMMVVLETARQVAGTDANILILGESGTGKGELARAIHGWS 192
           L+       Q   G    S +M  V  T    A + A+I I GESGTGK   A AIH  S
Sbjct: 118 LKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAAS 177

Query: 193 KRSKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEIGDFP 252
           KR  K  + INC ++  +L+ESELFGH +GAFTGA+    G    ADGGTLFLDE+ +  
Sbjct: 178 KRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMD 237

Query: 253 LTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRLNVIT 312
           L LQ KLLRFIQ   +++VG    +  DVR + ATN +    V++GRFREDL YRL VI 
Sbjct: 238 LDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIP 297

Query: 313 LHLPPLRERSEDILTLADRFLARFVKEYARPARGFSDEAREALLNYRWPGNIRELRNVVE 372
           LHLPPLR R +D++ +A   L    KE  +     S E  E    Y WPGN+R+L+NV+ 
Sbjct: 298 LHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLR 357

Query: 373 RASIICPQEKVEITHLGMAEQPGN--NAPRIGAALSLDQLEKAHI--------------- 415
             +++   E  EIT L M   P N  +AP I  AL L    K  +               
Sbjct: 358 --NVVVLNEGREIT-LDMLPPPLNQMSAP-INRALPLAHENKVSVHEIFPLWMTEKQAIE 413

Query: 416 GAVLATSDTLDQAARTLGIDASTLYRKRKQYN 447
            A+ A    + +AA  L +  ST+YRK + +N
Sbjct: 414 QAIEACDGNIPRAATYLDVSPSTIYRKLQTWN 445