Pairwise Alignments

Query, 448 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

Subject, 450 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  287 bits (734), Expect = 5e-82
 Identities = 173/443 (39%), Positives = 253/443 (57%), Gaps = 6/443 (1%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYTVATANSAAQADALMQRQVFDLCFLDLRLGEDNGLDV 70
           IL+V+DE          L    Y V +A+S  QA  +++    DL F D +LG+  G+D+
Sbjct: 8   ILVVEDEPDQRALIVQMLTANQYLVESADSVEQAIVMIKASAPDLVFSDWKLGQLTGMDL 67

Query: 71  LAQMRIQAPWMRVVIVTAHSAVDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLS 130
           L  +R + P M  +I TA+  +  AVDA+QAGA DYL KP     L LA  K  +   L 
Sbjct: 68  LNYVRREHPDMGFIIATAYGTITHAVDAMQAGADDYLAKPYQRQSLLLAIEKVAKSIALK 127

Query: 131 ARLEALEGEVRQPKD--GLDSHSPSMMVVLETARQVAGTDANILILGESGTGKGELARAI 188
            +   L  E+ Q ++  GL   S  M  V +  ++V+ TDA +LI GESGTGK   ARA+
Sbjct: 128 RQNRRLSSELSQQQELVGLVGRSALMQKVYQRVQRVSATDATVLIGGESGTGKELAARAL 187

Query: 189 HGWSKRSKKSCVTINCPSLTAELMESELFGHSRGAFTGASESTLGRVNQADGGTLFLDEI 248
           +  S RS K  V INC ++   L E+ELFG  +GA+TGA+   +G++  ADGGT+FLDEI
Sbjct: 188 YQLSARSHKPFVAINCGAIPESLAEAELFGAEKGAYTGANTQKIGKLEAADGGTVFLDEI 247

Query: 249 GDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEDMVRDGRFREDLLYRL 308
           G+ PL  Q KLLRF+Q+    R+G     + DVR++AAT+ +L+  V +GRFREDL YRL
Sbjct: 248 GELPLLQQTKLLRFLQEGVISRLGQNSEIKLDVRVIAATHRDLQQEVAEGRFREDLYYRL 307

Query: 309 NVITLHLPPLRERSEDILTLADRFLARFVKEYARPARGFSDEAREALLNYRWPGNIRELR 368
           NV+ +H+P LRER EDI  L + FL     +Y       S +  ++LL++ WPGN+REL 
Sbjct: 308 NVVPIHMPALRERPEDIGRLVEHFLKLHANQYGMEVPKLSRDTLKSLLDHSWPGNVRELA 367

Query: 369 NVVERASIICPQEKVEITHLGMAEQPGNNAPRI--GAALSLDQLEKAHIGAVLATSD-TL 425
           N +ER  ++  +E++ +  LG A QP +    +   A +  +  EK  +   L   +   
Sbjct: 368 NRIERFVLLGDEEEM-VQELGAAPQPLDTKRFVLPEAGIEWESFEKDCLRQALDRFEGNR 426

Query: 426 DQAARTLGIDASTLYRKRKQYNL 448
            +AA+ LG+       + ++Y L
Sbjct: 427 TKAAKCLGLSYKAFLYRLEKYQL 449