Pairwise Alignments

Query, 712 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 630 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  275 bits (704), Expect = 4e-78
 Identities = 181/520 (34%), Positives = 295/520 (56%), Gaps = 33/520 (6%)

Query: 207 KVGNAMVMLASFI------------EPIMIDGAFQGIVGADLSVNFIQDMLTSADQKL-Y 253
           K  NAMVM A ++            EP+M+ G   G+  A+L++    D LT A Q+L  
Sbjct: 130 KAANAMVMTAPYVSATLKKQVVTIAEPVMVSGRLFGVAAANLTI----DQLTDAVQRLEV 185

Query: 254 NGAGEMALISSNGRLVAYTKDASKLGEKASDLLDSNELTNLNQLKAGEVRYDIDKEHGHI 313
            G G   ++ + G ++++    ++L  +    +DS+   +    +A     +  +  G  
Sbjct: 186 PGKGYTLMVDTAGLIISHPN--TQLNNQQLTKIDSHFTPSWLSQRANANTMEERELDGGT 243

Query: 314 ELFLPFTIGQADARWTLMLQLPLSAVMADSQKLQSDLEAQRKTDIFGMTIAGLLIAGIGL 373
           +L     +   D  W L+  +    +M+ +  L   + A        + +  L+I G+ L
Sbjct: 244 QLVYVAAVPSTD--WALIFVMNKQEIMSQATSLAWWMSA--------VGVGLLVIFGLVL 293

Query: 374 LVIWLVGHGIARPLKQMVAMLNDIAQGEGDLTRRL-TSDRADELGAIANGFNTFLIKLQG 432
           + I+ +     + L+++   LNDIA+G+GDLT R+ T++  DE+G +A+GFN F+ +L G
Sbjct: 294 VAIFKMQF---KDLERVALALNDIAEGDGDLTVRIHTANSHDEIGILASGFNRFVERLHG 350

Query: 433 MITQVVSSVQKVSDSSEHTADIAIRTNQGVHKQMVEIDQVATAVHEMTATAQDVARNATQ 492
           MI+++ +   ++   ++ ++  A   +Q +  Q  E+  VATAV EM +  +++A NA  
Sbjct: 351 MISRMHNIAGQLEYQAKGSSASAADNSQRIEVQQDEVTMVATAVTEMASATEEIASNAEH 410

Query: 493 AAQAASHADQAASQGMRIVRDTSTSIGALAEEIGKAVSVVQTLAKDSENINAILTAIRGI 552
            AQ A +A   ++ G + V  +  SI  LA E+  A  ++  L + S+ IN+IL  I GI
Sbjct: 411 TAQTAQNAVSLSNHGQKQVMQSQQSIRNLANEVDTAGRIISELNEHSQKINSILLTISGI 470

Query: 553 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQKATEEIQTMIQQLQQGTRDV 612
           AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR L+Q+T  +T+EIQ MI+ LQQ     
Sbjct: 471 AEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHSSTQEIQAMIETLQQTAGKA 530

Query: 613 VRVMEDSQSRTDESVQHAAKAAEALETITQAVSVINDMNTQIASAAEEQSAVAEDINRNV 672
           V+ M  S    + SV  A  A+E+L  I++A++ I+DM +QIA+AAEEQ++V  +INRN 
Sbjct: 531 VKSMTQSHDMAETSVADANSASESLLQISKAINEISDMASQIATAAEEQTSVTSEINRNT 590

Query: 673 INIGQVANEVAGGADESSAASADLTKLAEQQRRLINQFKV 712
            +I +V+  ++  A  +   S +L  LA   ++ +++FK+
Sbjct: 591 ESIREVSENLSIEAQSAMVQSQELAHLAASLQQEVSRFKL 630