Pairwise Alignments

Query, 258 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

Subject, 263 a.a., amidase (AMPD protein) from Sinorhizobium meliloti 1021

 Score =  140 bits (352), Expect = 3e-38
 Identities = 93/239 (38%), Positives = 119/239 (49%), Gaps = 18/239 (7%)

Query: 27  PSVNHDNRV-----QFVIVHYTSTNLERSLA---LLTHGQVSSHYLIGDDASGTIYKLVD 78
           PS NH  R        +I+HYT      S          QVS HY +  D  G I +LV 
Sbjct: 15  PSPNHGERAGGRRPDMIILHYTGMETAASALDWLCREESQVSCHYFV--DEEGRIAQLVP 72

Query: 79  ESQRAWHAGESEWMGRTWLNSSSIGIEIVNPGYKDTPTGRVWYPYSEAQVKSLVVLLKDI 138
           E +RAWHAG+  W G T +NS SIGIEI N G+   P G   +P  EAQ++++  L  D 
Sbjct: 73  EERRAWHAGKGVWKGETDINSCSIGIEIANAGH---PGGLPDFP--EAQIEAVAELCLDC 127

Query: 139 SKRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLADEGLGVWPNAQAV--ARFQVQYAAE 196
            +R  I P+ ++ HSDIAP+RK+DPG  FPW  L   G+G W     V   RF  +  + 
Sbjct: 128 GERWQITPERVLAHSDIAPIRKVDPGENFPWDVLFRRGVGHWVEPAPVRGGRFFQRGDSG 187

Query: 197 LPSITWFQEELARLGYQTPQTGELDVATRHVIAAFQMRFRPSLFDGTPDAESAAILRAL 255
            P +   Q  L   GY    TG+    T  V+AAFQ  FR S  DG  D  +   L  L
Sbjct: 188 QP-VEALQSMLLLYGYGVEITGDFCARTEGVVAAFQRHFRQSRVDGIADVSTIDTLHRL 245