Pairwise Alignments

Query, 497 a.a., RNA polymerase factor sigma-54 from Pseudomonas simiae WCS417

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  289 bits (740), Expect = 1e-82
 Identities = 181/509 (35%), Positives = 283/509 (55%), Gaps = 22/509 (4%)

Query: 1   MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGD----DF 56
           +  SL LR  Q L MTPQL Q+I+LLQ++ L+L   I + +E NP+LE Q   +    D 
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 57  DNADPL-----ADNIEQKPNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDV 111
           ++A P       +  E    SD+ + +   +   +    + D+    P++     A    
Sbjct: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRADAPE 122

Query: 112 YQTSASSLPSNDDDE-WDFTTRTSVGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQ 170
                 S+P   D E +D        ++L+  L  QL  A  + +DRLIA   ID +++ 
Sbjct: 123 LLGQWKSMPGAGDAEGYDLDDFVGGRKTLRETLAEQLPFALSAVSDRLIARYFIDQLDDA 182

Query: 171 GYLDETLEEILEAFDPELDIELDEIEAVLHRIQQFEPAGIGARTLSECLLLQLRQLPAKT 230
           GYL   L E  E     L    +++  VLH +QQF+P G+ ARTL ECL +QLR      
Sbjct: 183 GYLHADLAETAET----LGAAGEDVARVLHVLQQFDPPGVFARTLGECLAIQLRARNR-- 236

Query: 231 AWLTEAQRLVTDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAE 290
             L  A   +   ++LL  RD++ L +   + E+DL  ++  ++ L+P+PG+  E+   E
Sbjct: 237 --LDPAMEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFETGVFE 294

Query: 291 YVVPDVIVRKDNER-WLVELNQESVPRLRVNPQYAGFVRRAD--TSADNTFMRNQLQEAR 347
            ++PDV+VR   +  WLVELN +++PR+ VN  Y   + R+    S +  F+   LQ A 
Sbjct: 295 AIIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNECLQNAN 354

Query: 348 WFIKSLQSRNETLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQ 407
           W  +SL  R  T+MKVA++IV  Q  FL +G   ++PL L  +A+A+ MHEST+SRVT+ 
Sbjct: 355 WLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVSRVTSN 414

Query: 408 KFMHTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLSDSKIAGLL 466
           K+M TPRG++ELKYFF+  + ++E G+  S+ ++R  I+ ++  E+    LSD  I  +L
Sbjct: 415 KYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDDIVDVL 474

Query: 467 EAQGIQVARRTVAKYRESLGIAPSSERKR 495
           +  G+ +ARRTVAKYRE++ I  S +R+R
Sbjct: 475 KQAGVDIARRTVAKYREAMSIPSSVQRRR 503