Pairwise Alignments

Query, 101 a.a., ribosome hibernation promoting factor HPF from Pseudomonas simiae WCS417

Subject, 99 a.a., sigma-54 modulation protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 52.4 bits (124), Expect = 1e-12
 Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 4/98 (4%)

Query: 1  MQVNISGHHVEVTPPLREYVEQKLKRLEGHFDKITNVQVIMKVDKLQ--QKIEATLQ--I 56
          M + I   H + +  L+ ++++K+ +LE +++ I  V+V +KV K +  +  EA ++  I
Sbjct: 1  MDIRIQSIHFDASEQLQAFIQKKVSKLEKYYEDIKKVEVSLKVVKPEAAENKEAGIKILI 60

Query: 57 PGGEVVANAEHEDMYASIDLLTDKLDRQLKKHKEKNLS 94
          P GE  A+   +    ++DL  + L++QL K+KEK  S
Sbjct: 61 PNGEFYASKVCDTFEEAVDLDVEALEKQLVKYKEKQRS 98