Pairwise Alignments

Query, 285 a.a., glmZ(sRNA)-inactivating NTPase from Pseudomonas simiae WCS417

Subject, 282 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  256 bits (653), Expect = 5e-73
 Identities = 135/284 (47%), Positives = 186/284 (65%), Gaps = 5/284 (1%)

Query: 1   MRLIIVSGRSGSGKSTALNVLEDSGFYCIDNLPAGLLPELAERALIHTELAQPLVAVSID 60
           M+L++VSGRSGSGKS AL VLED G+YC+DNLP  ++  L E+    ++L    VA+S+D
Sbjct: 1   MKLVLVSGRSGSGKSVALRVLEDLGYYCVDNLPLQMMESLLEQLKGRSDL----VAISVD 56

Query: 61  ARNLPSHLERFPQLLEEVRAKHIHCDVLYLDADEETLLKRFSETRRRHPLSSPHRSLAEA 120
            RN+PS   +  + L ++  K       +L++ +  LLKR+SETRR HPLS    SL EA
Sbjct: 57  VRNMPSEEIQLEKQLAKL-PKDTEILSFFLNSSDNVLLKRYSETRRLHPLSRSKVSLKEA 115

Query: 121 IEDETKLLGPIIDLADLKINTTSLNLYQLRDAIKLRLLNQPEPGTAFLVESFGFKRGMPV 180
           I+ E KLL PI  L D  I+T++LN+Y+L D ++  LL   +       ESFGFK GMP 
Sbjct: 116 IQLEGKLLDPIAKLVDHYIDTSNLNIYELSDKVREILLGTVDKELVINFESFGFKYGMPT 175

Query: 181 DADLVFDVRCLPNPYWKPELREQSGLDQAVADYLAAQPDVEEMFQDISSYLLKWLPRFAA 240
           +AD +FDVR LPNP+W+ ELR  +GLD+ V  +L+ QP V +    I + L  WLP    
Sbjct: 176 EADFMFDVRFLPNPHWETELRPLTGLDEPVQQFLSQQPLVNKFIWQIENLLETWLPHLER 235

Query: 241 SNRAYVTIAIGCTGGHHRSVYLTERLGQVLQQTLKNVQVRHRDL 284
           +NR+Y+TIAIGCTGG HRSVY+T++L ++  +    VQ RHR+L
Sbjct: 236 NNRSYLTIAIGCTGGQHRSVYVTDQLAKLFNKGKHKVQARHREL 279