Pairwise Alignments

Query, 420 a.a., histidine kinase from Pseudomonas simiae WCS417

Subject, 415 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  163 bits (412), Expect = 1e-44
 Identities = 121/374 (32%), Positives = 194/374 (51%), Gaps = 20/374 (5%)

Query: 49  LGVTLGFSTVLCAFTAIRLRTTWPVTELEYALQLACDLFIHSVLLYFSGGSTNPFVSYYL 108
           L +TL       +FT   LR     +E    + L  D  +    LYFSGG+TN F+S  L
Sbjct: 46  LNLTLILEAFYLSFT-FWLRKPLLSSESGLFIALVLDTLLWISWLYFSGGATNAFISLLL 104

Query: 109 VPLTIAAVTLPWRYSVVLSGIALTLYTLLLARFYPLQTFPIARENLQIY--GMWLSFALS 166
           +P+ IAAV LP+     L+ ++   Y+L+L    P         ++Q +  GMW++F +S
Sbjct: 105 LPIAIAAVLLPFWAPWSLALLSNLAYSLMLFTM-PESAMSHHGMDMQSHYLGMWVNFIIS 163

Query: 167 AAVITFFAARMAEELRRQEELRAIRREEGLRDQQLLAVATQAAGAAHELGTPLATMSVLL 226
           + V+T   A +A+ +RRQ+   A  RE  LR ++L+A+ T +A  AH L TPLA+M +L+
Sbjct: 164 SLVLTTSVALLAKRMRRQDAQLAFMREAQLRQEKLIALGTASAQMAHRLATPLASMRLLV 223

Query: 227 NEMTQ--DHHDPALQEDLGVLREQVKQCKQTLQQLVRAAEANRRLAVEMQDVTQWLDEAL 284
           +E+ +  D + PALQE    ++  +  C+ TL  L  A E+ R  A  ++   Q L    
Sbjct: 224 DELQEEADGNGPALQE----MQSALTVCESTLTALRSATESIREGAQRLESAEQLLSGLS 279

Query: 285 NRWHLMRPEASYRFHLLGQGSVPRMAPPPD--LTQALLNLLNNAADACPDGLGVQ----- 337
            + +L+ P  + +  L     + R+    D  L  ALL L+ N A A  +  G Q     
Sbjct: 280 EQVNLLMP--AVKLSLEPDDGLDRLQLRVDASLQPALLALIENGARASQEATGEQKVSFS 337

Query: 338 LDWDAEDVTISIRDHGAGVPLAIAEQIGKPFFTTKGKGFGLGLFLSKASVTRAGGSVKLY 397
                +++ + +RD G G+P ++ +Q+G      + KG G+ L LS AS+ R GG + L 
Sbjct: 338 AQRQGDELVLGVRDFGPGIPASLVQQLGHQII-EEPKGMGVALLLSHASLERLGGRLILG 396

Query: 398 SHEEGGTLTELRLP 411
           SH +GG + ++ LP
Sbjct: 397 SHVDGGAVAQVYLP 410