Pairwise Alignments

Query, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 540 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  327 bits (837), Expect = 9e-94
 Identities = 174/503 (34%), Positives = 270/503 (53%), Gaps = 2/503 (0%)

Query: 25  ASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGGTEVEPGLATSWDISQD 84
           +S  VYC E++P  F+P    +    DA    ++N L             LA+SW ++  
Sbjct: 31  SSGFVYCGESAPTTFNPQLADNDITSDALGPQIYNTLLTIDPETHLPVASLASSWTVNST 90

Query: 85  GLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLDAQSPFRQAYPSESPYFTDMG 144
           GL Y F LR  V F TT +FSPTR  NADDV+F+F R++D  +P+ +   ++ P+F  + 
Sbjct: 91  GLEYVFKLRPDVAFQTTPWFSPTRPLNADDVVFSFRRIIDPTNPYHKVGQTQYPWFKGID 150

Query: 145 LNTTIKSVDKLDDHTVRFNLNNVDASFVQNLAMSFASVQSAEYAAQLLKQGKAEEINQKP 204
               +  V  LDD TV+F L+  D SF+ N+A S A + S EYA QL+   + E+++  P
Sbjct: 151 FQNLLVDVSALDDLTVKFVLSRPDNSFLSNIATSHAVILSLEYANQLIIDDEKEKLDNLP 210

Query: 205 VGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVFAITPDAASRLQKLKAGECQVSG 264
           +GTGPF    Y     IR   + QYW+    K++ +VF I+      L KL   EC V  
Sbjct: 211 LGTGPFYLAEYHPRDLIRLKRHPQYWEGA-AKVEQVVFDISQRGTGMLAKLLRNECDVLN 269

Query: 265 YPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVTHPPLDQLKVRQALDMAIDKPAIIKAV 324
            P  + +  ++++P++ +      N+ F+A N  HP L+  +VR+AL+ AI++  I+ +V
Sbjct: 270 APISSQLPAIEKNPDIVLQTTPAMNVAFIAVNTQHPALNDNRVRKALNFAINRQNILDSV 329

Query: 325 YQSAGQLAQNALPPAQWSYDPTIKDAPYDPTKAKALLKEAGVAPGTTVNLWAMTVQRASN 384
           Y   G +A   LPP  W+Y        YD   A+ALL+EAG A G  + +      +A N
Sbjct: 330 YYGTGSIAFTILPPTSWAYQQDTAQIRYDRNYAQALLREAGFATGLELTMSVPVEPKAYN 389

Query: 385 PNARMSAQMIQQDWEKVGIKANIVSYEWGEYIKRAKNGEHDAMIYGWTGDNGDPDNWLGV 444
           P+ R +A++IQ +   +G+   ++S +  E  + +     D  + GWTGD GDPDN+L  
Sbjct: 390 PSPRKTAELIQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTGDPDNFLRP 449

Query: 445 LYSCAAVK-GSNYAKWCNPAYDKLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANS 503
           L SC + + G N + WC+  +D L+  A  +N    R+  Y QAQ IL ++ P+ P+A+ 
Sbjct: 450 LLSCDSNRAGLNVSMWCDSDFDFLLDLALEANKPRYRLNLYHQAQNILNQEFPVIPLAHG 509

Query: 504 TVFQPLRKEVKDFKISPFGLTPF 526
             F    K +   +ISPF + PF
Sbjct: 510 IQFTAYSKSLTGIRISPFNVQPF 532