Pairwise Alignments

Query, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

Subject, 531 a.a., periplasmic dipeptide-binding protein from Sinorhizobium meliloti 1021

 Score =  519 bits (1337), Expect = e-152
 Identities = 262/530 (49%), Positives = 361/530 (68%), Gaps = 8/530 (1%)

Query: 7   LSAMFATSLLAVATMGHAADKRSLVFCSEGSPAGFDTAQYTTATDNDAA-EPLYNRLVEF 65
           L+ + A + +A    G A  K + VFCSEGSP GFD   YT  T  DAA   +Y+RL+EF
Sbjct: 4   LTTLLAATAIATLMAGTAWSK-TFVFCSEGSPEGFDPGLYTAGTTFDAAAHTVYSRLLEF 62

Query: 66  EKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRMLD 125
           +KG T   P LA  W IS DG+ YTF LR GVKF + + F PTR+ NADDV+F+  R   
Sbjct: 63  KKGTTETEPGLAESWTISDDGLEYTFKLRPGVKFQTTEFFTPTRELNADDVIFSIERQWK 122

Query: 126 PDHPFRKAYPT--EFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAI 183
            DHP+   Y T   + YF GM L + +  VEK D  TV + L   +A F+ N+AM FA+I
Sbjct: 123 SDHPWH-GYVTGGSWEYFAGMGLPELLESVEKVDDMTVKIKLKRKEAPFLANLAMPFASI 181

Query: 184 LSAEYAEQLLKAGKPSDINQKPIGTGPFVFQRYQKDSQIRYVANKQYWDPSRVKLDQLIF 243
           +S EYA++L   GK + +NQ P+GTGPF F  YQ+D+ IRY A+  +W   + K+D L+F
Sbjct: 182 MSKEYADKLQAEGKMNQLNQMPLGTGPFAFVGYQQDAVIRYKAHPDFWG-GKQKIDDLVF 240

Query: 244 AINTDASVRVQKLKAGECQVTLHPRPADVDALKADPNLKLLTKPGFNLGYIAYNVRHKPF 303
           AI TDA+VR QKL+AGEC +  +P  ADV+A+KADPNLK++ + G N+ Y+AYN    PF
Sbjct: 241 AITTDAAVRFQKLQAGECHLMPYPNAADVEAMKADPNLKVMEQAGLNVAYLAYNTTQPPF 300

Query: 304 DQLEVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSIKDAAYNPEKAKELLK 363
           D++EVR+AL+ A+NKQ+I++AV+QG    A N +PPT WSY++ I+D  Y+PE AK++L+
Sbjct: 301 DKVEVRKALNKAINKQAIVDAVFQGQATPATNPIPPTMWSYNEHIEDDTYDPEAAKKMLE 360

Query: 364 AAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKIVSYEWGEYIKRTKNG 423
            AGVK+   + +WAMPV RPY  NA+  AE++Q+D+AK+G+KV+IVSYEW EY++++K  
Sbjct: 361 DAGVKD-LSMKVWAMPVARPYMLNARRAAELMQADFAKVGVKVEIVSYEWAEYLEKSKAK 419

Query: 424 EHDVSLI-GWTGDNGDPDNWLGTLYSCDAIGGNNYSMWCDPAYDKLIKQAKVVTDREQRT 482
           + D ++I GWTGDNGDPDN+L TL  CDA+GGNN + WCD  +D+L+ +AK  +D  +RT
Sbjct: 420 DRDGAVILGWTGDNGDPDNFLDTLLGCDAVGGNNRAQWCDKEFDELVTKAKEASDVAERT 479

Query: 483 VLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFGRNVFSGVSI 532
            LY++AQ + K++ P   + HS    P+   VEGF  SP G   F GV I
Sbjct: 480 KLYEEAQVVFKREAPWATLDHSLSIVPMRKNVEGFVQSPLGDFAFDGVDI 529