Pairwise Alignments

Query, 471 a.a., porin from Pseudomonas simiae WCS417

Subject, 447 a.a., Outer membrane porin, OprD family from Pseudomonas fluorescens FW300-N2E2

 Score =  196 bits (498), Expect = 1e-54
 Identities = 139/449 (30%), Positives = 211/449 (46%), Gaps = 45/449 (10%)

Query: 34  LAGTSAQSEAKGFIDGQSLGGTTRNWYSNEMKFRGQKFGYYKNAADKAADVKTNVSRRYN 93
           +A   AQS   GF+DG +L   +RN+Y N                D  A      S +  
Sbjct: 29  MAAELAQS-TPGFLDGATLQVLSRNFYLNN---------------DYRAPTPAGKSYKQE 72

Query: 94  WAQGTILNYSSGFTQGTVGVATEVAAYNYIALIDDQKDIAGGSNRTLAHTYGDAVGQWSK 153
           WAQG I ++ SGFT GT+GV  +  A+ ++ L  D      G+        G +   +S 
Sbjct: 73  WAQGFIASFESGFTPGTIGVGID--AHGFLGLKLDGGKGHSGTGLLPLDENGRSEDHYSS 130

Query: 154 LGLANVKFRVSNTTLTAGRQNFSSGIMDTIGNRALPSSFEGVSFNSEEFSNLSFQGGVFD 213
            G A +KF  S TTL  G     S + DT   R  P    G+  +S EF  +  Q G F 
Sbjct: 131 AGGA-LKFNASRTTLAVGEMTVQSPVFDTADKRLQPEYASGLLLSSREFEGVDLQAGHF- 188

Query: 214 RVSPRTEQSLSKFRSEYSSSGVETDK--VYTLGFNYQPLKSLKTSVFAANVKDFWNQYYF 271
             S    Q  S  + ++S  G  T    +  +G +    ++L  +++A+ + D W QYY 
Sbjct: 189 --SAFKNQDASTSKGDFSGYGATTRHGVIDFIGADLLSGQALGGALYASELSDTWRQYYA 246

Query: 272 GATHELGDSQVLSLTTGLNYYKTVDEGKKLMGEIDNDTYSLSLGLTHQAHSLTFSYQEVN 331
                +G+     L    N Y T D+GK + G ID   YSLS      A + T +YQ++N
Sbjct: 247 NLHATVGE-----LFLDGNLYHTRDDGKAIAGAIDTTAYSLSGKYRFNAQAFTLAYQKIN 301

Query: 332 GNEYFDYLHETNGIYLANSLT-SDFNGPNEKSFQVAYAINMAEYGVPGLKFNIYSARGWG 390
           G+  FD++   + IYLANS+  +DFNGP E+S+Q  Y +++   G+PGL F      G G
Sbjct: 302 GDTPFDFVGG-DSIYLANSIKYADFNGPGERSWQARYDLDLGTLGIPGLSFMARYVTGRG 360

Query: 391 IDGTHYRGDNGVKDFAYNGIQAQNGEHHQEYGIGS---------SYAIQSGPLKATTVRA 441
           IDG+H       +  AYN   +  G +  + G G+          Y +QSGP K  +++ 
Sbjct: 361 IDGSH-----APQGGAYNPFDSDTGTYSPQQGAGARHWERDLDLHYIVQSGPAKDLSLQL 415

Query: 442 TYVTHRASENQSDGNLREFRLVTTIPFNI 470
           ++VTHRA+ +Q   ++    +V   P  +
Sbjct: 416 SHVTHRANSSQGGDDIDRLYIVIQYPLKL 444