Pairwise Alignments

Query, 925 a.a., DNA polymerase I from Pseudomonas simiae WCS417

Subject, 283 a.a., flap endonuclease Xni from Vibrio cholerae E7946 ATCC 55056

 Score =  114 bits (284), Expect = 1e-29
 Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 6   LVLVDGSSYLYRAFHALPP---LTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFD-- 60
           LV++D  + + R   A P    +T +    T  ++ ++N  +        S    VFD  
Sbjct: 29  LVIIDALNLIRRVHSAQPDPNDITRTAETTTRTLQRIINEAQP-------SHMIAVFDHH 81

Query: 61  AKGGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120
                +R E+   YKANR  MPD ++  I+ +  +   LG   L  EG EADD++ TLA 
Sbjct: 82  LSDRGWRAELLPTYKANRKPMPDVLQQGIDAIQDAWWQLGIDSLLSEGDEADDLVATLAC 141

Query: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALM 180
             AA    V I + DK   QL+   + + +      +D   + ++FGV P Q+ DY  L 
Sbjct: 142 KVAAHQEKVTIISTDKGYCQLLSPTLQIRDYFQQRWLDEPFIAQEFGVTPAQLTDYWGLT 201

Query: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGIKELYEQLDIVPSLPIRGAKTLPAKLEEHREM 240
           G SS  IPGV GIGPK A  +L      I+E Y      P LP +  K    KL+ H EM
Sbjct: 202 GVSSSQIPGVAGIGPKAAKEIL-NQFSSIEEAYAS----PELPAKYRK----KLDPHIEM 252

Query: 241 AFLSYQLATIKCDVPLDVGLDDL 263
           A +  Q++ +K D+ L   L D+
Sbjct: 253 ARICKQVSALKTDIELGFNLQDI 275