Pairwise Alignments

Query, 925 a.a., DNA polymerase I from Pseudomonas simiae WCS417

Subject, 953 a.a., DNA polymerase I from Synechococcus elongatus PCC 7942

 Score =  584 bits (1506), Expect = e-171
 Identities = 389/983 (39%), Positives = 546/983 (55%), Gaps = 102/983 (10%)

Query: 6   LVLVDGSSYLYRAFHALPP-----LTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFD 60
           L+LVDG S  +R+++A        L T  G+PT    G L  L  + +Q      A+ FD
Sbjct: 8   LLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALAIAFD 67

Query: 61  AKGGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120
             G TFR E    YKANR   P+D ++  + L   +  L  P+L   G EADD++GT+A+
Sbjct: 68  LGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLGTVAQ 127

Query: 121 SSAAADRPVVISTGDKDMAQLVDGH-----ITLVNTMTGSA-------MDIEGVKEKFGV 168
             A A   V I +GD+D+ QLVD       + L NT   SA       +D   V +K GV
Sbjct: 128 RGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREIDPAAVIDKLGV 187

Query: 169 APEQIIDYLALMGDSSDNIPGVPGIGPKTASGLLVGVNGGIKELYEQLDIVPSLPIRGAK 228
            PEQ+ID+ AL GDSSDNIPGV GIGPKTA  LL    G +  +Y+ L+ +         
Sbjct: 188 PPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAW-GDLDRIYDNLEAIKP------- 239

Query: 229 TLPAKLEEHREMAFLSYQLATIKCDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDE 288
            +  KLE  RE A+ S +LA I  D+PL +  D   L   D +++L     LE +++  +
Sbjct: 240 AVRKKLESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAFRRQ 299

Query: 289 IQR--------------------DAKRVELKAA-----PAVEAVVETVAPTEASYTTILD 323
           + R                    D    E  AA     P ++  + T A       T+L+
Sbjct: 300 VDRLQQLFGGQPPTVEALSDESLDFWTAEETAAQQPRWPQLQPQIITTAAALTDLVTLLE 359

Query: 324 QATFDIWLKKLNEATLFAFDTETTGIDAQQAQLVGVSFA--VQPHEAAYIPLTHSYIGAP 381
           Q          +   + A+DTETT +D + AQLVG+  A   +P + AYIPL H      
Sbjct: 360 QRD--------SPEAIVAWDTETTDLDPRLAQLVGIGCAWGEEPDQLAYIPLGHE---EG 408

Query: 382 QQLDRDTVLLALKPLLEDPTKLKVGQHAKFDMNILANCAIGGDPAHGITVRGIAFDTMLE 441
           +QL   TVL AL+P+LE     K  Q+AKFD  IL +         GI + G+ FDTML 
Sbjct: 409 EQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRH--------QGIELAGVVFDTMLA 460

Query: 442 SYVLNSTATRHDMDSLAKKYLDYDTVAFQDIAGKGAKQLTFDQIALEQAGPYAAEDADIT 501
           SY+LN +   H +D+LA ++L   T ++ D+  KG    T  Q+A+     Y   D  + 
Sbjct: 461 SYLLNPSLG-HSLDALADRWLKLQTRSYSDLVPKGK---TIAQVAIAAVAQYCGSDVHVV 516

Query: 502 LRLHQELFAQLSAIPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGNKMVE 561
            RL   L A ++  P+L  +L  +E+PL  VLA +E +G  +D+  L   S  L  ++  
Sbjct: 517 QRLIPLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDR 576

Query: 562 LERQAFEIAGEEFNLGSPKQLGAILYEKLGLPVLK--KTGKGQASTAEEVLAKLAEDDYP 619
           LE  A  +AG+ FNLGSPKQL  +L+EKLGL V K  KT  G  ST   VL KL + D+P
Sbjct: 577 LEGAAHTLAGDRFNLGSPKQLSELLFEKLGLNVKKSRKTKTGY-STDAAVLEKL-QGDHP 634

Query: 620 LPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAATGRLSSSDPNLQNIPVR 679
           +  +++++R+++KLKSTY D LP  +    GRIHT ++QAV ATGRLSSS+PNLQNIP+R
Sbjct: 635 IIDLILEHRTLAKLKSTYVDALPSLV-AADGRIHTDFNQAVTATGRLSSSNPNLQNIPIR 693

Query: 680 TAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEGLMNAFRDNLDVHTATAAEVF 739
           T   R+IR+AF+  +G+ L AADYSQIELRI+AHLS++  L+ A+R   DVH  TA+ +F
Sbjct: 694 TEFSRQIRKAFLPREGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF 753

Query: 740 KVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDVYFARYPGVREYM 799
             E  ++TS++RR  K INFG+IYGMGAQ+  ++ G  TK A+ +ID ++ RYP V  Y+
Sbjct: 754 DRE--EITSEERRIGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYL 811

Query: 800 ERTRAQAADQGYVETFFGRRLYLP-----------------DINSNKPQE-RAAAERTAI 841
           +    QA  +GYVET  GRR Y                   D++  +P    A   R A 
Sbjct: 812 QSLERQAIARGYVETVLGRRRYFDFEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAA 871

Query: 842 NAPMQGTAADIIKKAMVRVDNWLTESGLDAKVILQVHDELVVEVREDLVAQVSEKIREHM 901
           NAP+QG++ADIIK AMV++   L      A+++LQVHDELV+E+  +    ++ +I++ M
Sbjct: 872 NAPIQGSSADIIKVAMVQLQALL--QSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTM 929

Query: 902 SAAAQLDVPLLVEVGVGNNWDEA 924
             A QL VPL VE+  G+NW EA
Sbjct: 930 EQAVQLTVPLAVELHAGHNWMEA 952