Pairwise Alignments

Query, 925 a.a., DNA polymerase I from Pseudomonas simiae WCS417

Subject, 1004 a.a., DNA polymerase I from Sinorhizobium meliloti 1021

 Score =  511 bits (1316), Expect = e-149
 Identities = 290/631 (45%), Positives = 392/631 (62%), Gaps = 31/631 (4%)

Query: 316  ASYTTILDQATFDIWLKKLNEATLFAFDTETTGIDAQQAQLVGVSFAVQPH--------- 366
            + Y TI D  T + W+    EA L  FDT+ T  DA +A LVG S AV  +         
Sbjct: 384  SGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAMRADLVGFSLAVADYANDPSGSRI 443

Query: 367  EAAYIPLTHS------YIGAP--QQLDRDTVLLALKPLLEDPTKLKVGQHAKFDMNILAN 418
             AAY+PL H         G P   Q+     L  LK LLEDP+ LKVGQ+ K+   ++  
Sbjct: 444  RAAYVPLAHKSGVSDLLGGGPVDSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKR 503

Query: 419  CAIGGDPAHGITVRGIAFDTMLESYVLNSTATRHDMDSLAKKYLDYDTVAFQDIAGKGAK 478
                    HGI +R    DTML SYVL++    H MDSLA+++L +  +A++D+ G G  
Sbjct: 504  --------HGIAMRSFD-DTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRS 554

Query: 479  QLTFDQIALEQAGPYAAEDADITLRLHQELFAQLSAIPSLASVLTDIEIPLVPVLARIER 538
             LTFD + +++A  YAAEDADI LRL   L  +L+A   L  V   +E PL+ VLA +E 
Sbjct: 555  SLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAA-KGLTRVYERLERPLISVLAGMEE 613

Query: 539  QGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLPVLKKT 598
            +G  VD+ +L   S EL      LE + + +AGE F +GSPKQLG IL+ K+GLP   KT
Sbjct: 614  RGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDILFGKMGLPGGSKT 673

Query: 599  GKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 658
              GQ ST+ +VL  LA   + LP+ ++ +R ++KLKSTYTD LP  ++P T R+HT +  
Sbjct: 674  KTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM 733

Query: 659  AVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDE 718
            A   TGRLSSSDPNLQNIP+RT EGR+IR AFVA  G+KL++ADYSQIELR++AH++   
Sbjct: 734  AATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIP 793

Query: 719  GLMNAFRDNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDT 778
             L  AF D +D+H  TA+E+F V +  + S+ RR AKAINFG+IYG+ A  L   + ++ 
Sbjct: 794  QLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYGISAFGLANQLSIER 853

Query: 779  KTAKAYIDVYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPDINSNKPQERAAAER 838
              A  YI  YF R+PG+R+YME T+A A + GYVET FGRR + PDI S+ P  RA  ER
Sbjct: 854  SEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPDIRSSNPSMRAFNER 913

Query: 839  TAINAPMQGTAADIIKKAMVRVDNWLTESGLDAKVILQVHDELVVEVREDLVAQVSEKIR 898
             +INAP+QG+AADII++AMV+++  L  + L A+++LQVHDEL+ EV +  + +    I 
Sbjct: 914  ASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEVEDGEIERTIPVII 973

Query: 899  EHMSAAA----QLDVPLLVEVGVGNNWDEAH 925
              M  AA     + VPL V+    +NWDEAH
Sbjct: 974  SVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004



 Score =  186 bits (473), Expect = 5e-51
 Identities = 122/322 (37%), Positives = 170/322 (52%), Gaps = 30/322 (9%)

Query: 6   LVLVDGSSYLYRAFHALPPLTT-SKGLPTGAVKGVLNMLKSLRKQYPNSP-------FAV 57
           L LVDGS +++RAFHA+PPL   S GLP  AV G  NML  L     ++         AV
Sbjct: 7   LFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVTPTHLAV 66

Query: 58  VFDAKGGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGT 117
           +FD    TFR+ +Y +YKANR + P+D+  Q   +  +  A   P +  EG EADD+I T
Sbjct: 67  IFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEADDLIAT 126

Query: 118 LARSSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYL 177
            AR +  A   V I + DKD+ QLV   +++ ++M    + +  V EK+GV PE++ID  
Sbjct: 127 YARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPEKMIDLQ 186

Query: 178 ALMGDSSDNIPGVPGIGPKTASGLLVGVNGGIKELYEQLDIVPSLPIRGAKTLPAKLEE- 236
           A+ GDS+DN+PG+PGIGPKTA+ LL        E Y  LD   +L  R  +    K  E 
Sbjct: 187 AMTGDSTDNVPGIPGIGPKTAAQLL--------EEYGDLD---TLLARAGEIKQQKRRES 235

Query: 237 ---HREMAFLSYQLATIKCDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQRDA 293
              + ++A LS +L T+K D PLDV  +D  L   D  KL+     +EF +         
Sbjct: 236 IIANADLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTL-------T 288

Query: 294 KRVELKAAPAVEAVVETVAPTE 315
           +RV        EA+     P E
Sbjct: 289 RRVAAATDTDAEAIEPAHVPVE 310