Pairwise Alignments

Query, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

Subject, 308 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  227 bits (578), Expect = 3e-64
 Identities = 129/337 (38%), Positives = 196/337 (58%), Gaps = 38/337 (11%)

Query: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERL---- 56
           M  F+  RL   + T   +    F ++RM  GDP +VM+G     P++   A++      
Sbjct: 1   MIRFVLVRLMRAVITILAVVTFAFVVLRM-SGDPAQVMLG-----PDVPQDAVDAFRKTW 54

Query: 57  GLNKPLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLL 116
           GL++P++ QYL Y+  +  GD G S+R + S         PATL+L++ AL+   ++G+ 
Sbjct: 55  GLDQPIWIQYLAYIKSIFTGDFGVSMRDKASALHLVLERVPATLQLTLPALILKLMIGIP 114

Query: 117 AGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIE 176
           AGV AAL R S  D GV+ +++ G+++P F  GL+L++ FSV LG  P  G+        
Sbjct: 115 AGVYAALHRQSFADRGVITLAIIGFTVPSFVMGLVLVLIFSVLLGVLPSGGQ-------- 166

Query: 177 PRTGFMLIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRT 236
                               D   H ILP I +    + ++AR +RS+M+EVL + YIRT
Sbjct: 167 --------------------DTWMHGILPTITMSIGGIGILARFSRSAMIEVLGQPYIRT 206

Query: 237 AKAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIG 296
           A AKGL    V++ H L NA +P++T+VG  VG+L+AGAV+ E+IFSWPGIG+ LI ++ 
Sbjct: 207 ASAKGLKWRDVIWSHALPNAAVPIVTIVGFMVGSLIAGAVVVESIFSWPGIGRLLIVSVS 266

Query: 297 ARDYPVVQNGILLIACLVILVNFVVDILYGFANPRIR 333
            RD  VVQ  +L+IA  +++ N VVD+LYG+ +PR+R
Sbjct: 267 NRDLAVVQCILLIIAAAMVMSNLVVDLLYGWLDPRLR 303