Pairwise Alignments

Query, 303 a.a., peptide transporter from Pseudomonas simiae WCS417

Subject, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  217 bits (552), Expect = 3e-61
 Identities = 117/302 (38%), Positives = 181/302 (59%), Gaps = 19/302 (6%)

Query: 17  PSPYKEFWQA-----FSKNKGAVAGLLFMLLIVFCAIFAPWVAPHNPSEQYRDFLLT--- 68
           PS ++ F Q+     F ++K A++     +L V  AI AP +AP NP +     ++    
Sbjct: 8   PSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAEL 67

Query: 69  PPAWLEGGQMQFLLGTDELGRDLLSRLIQGSRLSLLIGLSSVVMSLIPGILLGLFAGFFP 128
           PP+W+EGG   FLLGTDE GRD+ S ++ GSRLSL IG  +V + L  GI++GL AG+F 
Sbjct: 68  PPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFG 127

Query: 129 RLLGPTIMRLMDIMLALPSLLLAVAIVAILGPG----------LINTVIAIAIVSLPSYV 178
             +   +MR  DI L+  ++++A+ + AI              ++  V+ I +   P Y 
Sbjct: 128 GRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYA 187

Query: 179 RLTRAAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAAL 238
           R  RA+V+ E  ++YV AAR+ G   PR+MF  +LPNC++P++V +T+  ++AI+  AAL
Sbjct: 188 RTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAAL 247

Query: 239 GFLGLGVQPPTPEWGTMLASARDYI-ERAWWVVSLPGLTILLSVLAINLMGDGLRDALDP 297
            FLGLG+    P  G++++    YI   AWW+ + PG+ ++L VL INL+GD LRD  +P
Sbjct: 248 SFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNP 307

Query: 298 KL 299
           K+
Sbjct: 308 KI 309