Pairwise Alignments

Query, 303 a.a., peptide transporter from Pseudomonas simiae WCS417

Subject, 319 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  230 bits (586), Expect = 4e-65
 Identities = 123/296 (41%), Positives = 179/296 (60%), Gaps = 8/296 (2%)

Query: 3   TPTPVSAVDQSLLYPSPYKEFWQAFSKNKGAVAGLLFMLLIVFCAIFAPWVAPHNPSEQY 62
           +PTPV     + +      E W     +K A  GL  +LLIVF A+FAP +AP++P+ Q 
Sbjct: 9   SPTPVG----TRVPRGRISELWH----DKTAAIGLALILLIVFLALFAPLIAPYDPAAQS 60

Query: 63  RDFLLTPPAWLEGGQMQFLLGTDELGRDLLSRLIQGSRLSLLIGLSSVVMSLIPGILLGL 122
               L PP W+E G  + LLGTD LGRD+LSR+I G+R +L IG  + +++   G ++GL
Sbjct: 61  IMARLKPPVWMERGTWEHLLGTDNLGRDVLSRIIWGARATLTIGAVTCLLAATLGTVIGL 120

Query: 123 FAGFFPRLLGPTIMRLMDIMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLTR 182
           +AGF        +MRL+DI ++ P +LL + +VA+LGPG+   V  +++ +   Y RL R
Sbjct: 121 WAGFMGGRTDSILMRLVDIQVSFPGILLILLVVAVLGPGVWTLVAVLSVTNWMVYARLVR 180

Query: 183 AAVMGELNRDYVTAARLAGAGLPRLMFITVLPNCMAPLIVQATLSFSSAILDAAALGFLG 242
             V       YV AA + G    R++F  +LPN ++PL+  A L F++ +L  AA+ FLG
Sbjct: 181 GIVSSTRQTPYVEAAEVIGCRPARVIFRHILPNIVSPLMTLAILEFTNIVLAEAAVSFLG 240

Query: 243 LGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPK 298
            GVQPP   WG  +AS RDY+  AWW+V+ PGL I+ +VL+INL  + LR   DP+
Sbjct: 241 FGVQPPATSWGLDVASGRDYLFIAWWLVTFPGLAIVATVLSINLFANWLRVTTDPE 296