Pairwise Alignments

Query, 238 a.a., glycine/betaine ABC transporter permease from Pseudomonas simiae WCS417

Subject, 227 a.a., Glycine betaine ABC transport system permease protein from Pseudomonas fluorescens FW300-N2E2

 Score =  118 bits (296), Expect = 9e-32
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 9/221 (4%)

Query: 13  AVVVALLALLVHWIGINTIELYRDDLLFYLQAHLILVLVSMLAALVVGIPAGILLSRPNM 72
           A V    +L  HW+G        D +L  L  H+  V +S+  A  + +P G+L++  N 
Sbjct: 5   ADVYLWFSLPEHWLG-------EDGILTRLAEHIYYVSLSLAIACAIALPLGVLMA--NY 55

Query: 73  VGRAERFMQIFNIGNTVPPLAVLAIALGVLGIGSGPAIFALFLASLLPIVRNTYEGLKNV 132
              A+  + +FNIG  +P L ++ +A+ ++G  +   I AL   S+ PI+ NTY G+  V
Sbjct: 56  RKGAQVAIGLFNIGRALPSLGIVILAIMLIGYETSTVIIALVTMSIPPILTNTYVGIDQV 115

Query: 133 QGSLKEAAVGIGMTPRQVLFRVELPNAVPIIIGGVRVALAINVGTAPLAFLIGANSLGSL 192
             SLK AA  +GM   Q+  ++ELP A P+I  G R AL   + TA +A   G   LG  
Sbjct: 116 DSSLKHAAKSMGMRRWQMFIQLELPLAFPLIFSGFRSALVQLIATATIAAYAGFGGLGRF 175

Query: 193 IFPGIALNNQPQLLLGAACTALLALLLDGLVTMASRLWLER 233
           +  G+  N+ PQ++ GA   + LA++ + + +M   L + +
Sbjct: 176 LIDGLGRNDIPQIIGGALVVSALAIVSEWVCSMIETLMVRK 216



 Score = 25.4 bits (54), Expect = 0.001
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 9   LIGGAVVVALLALLVHWI 26
           +IGGA+VV+ LA++  W+
Sbjct: 188 IIGGALVVSALAIVSEWV 205