Pairwise Alignments

Query, 217 a.a., choline ABC transporter permease from Pseudomonas simiae WCS417

Subject, 245 a.a., choline uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  129 bits (323), Expect = 6e-35
 Identities = 78/210 (37%), Positives = 120/210 (57%), Gaps = 13/210 (6%)

Query: 5   NAFSHLDWAQVLQLTGQHITLVGIAVILAILIGVPLGILMTRFPTLAG----PLQAS-AT 59
           NA +  +   +  LT  H+  V +A + A ++ V L I++TR    AG    PL  S   
Sbjct: 37  NAPAVYNQGSLFWLTVLHLRTVFVATVAATIVAVSLAIIVTR---KAGAEFLPLSRSLVN 93

Query: 60  VLLTVPSIALFGLLLPFYSKFGQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREA 119
           +  T P +A+  L +P Y     G G  P + A+FLY LLPI  N    LT + P + EA
Sbjct: 94  IGQTFPPVAVLALAVPIY-----GFGEKPTLIALFLYGLLPIFENALTGLTTLPPTVMEA 148

Query: 120 ARGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISR 179
           ARG GMT  QRL  +ELP+A+PVIL G+R +VV+++   TI +T+ A  LG +I+A +  
Sbjct: 149 ARGAGMTGRQRLFRIELPLALPVILTGIRLSVVISLATATIGSTVAARTLGEVIIAGLQS 208

Query: 180 SDMSMLIVGAVLVSLLAIFADLLLQWLQRS 209
           ++++ ++ G ++V  LA+     LQ L+R+
Sbjct: 209 NNLAFVLQGGLIVGALAVLIHDALQGLERA 238