Pairwise Alignments

Query, 217 a.a., choline ABC transporter permease from Pseudomonas simiae WCS417

Subject, 229 a.a., Possible osmoprotectant (glycine betaine/carnitine/choline/L-proline) transport integral membrane protein ABC transporter ProW from Mycobacterium tuberculosis H37Rv

 Score =  108 bits (270), Expect = 8e-29
 Identities = 69/212 (32%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 1   MEFLNAFSHLDWAQVLQLTGQHITLVGIAVILAILIGVPLGILMTRFPTLAGPLQASATV 60
           M +L       WA    LT  H+ L  + V++ ++  VPLG+L+ R P L     A+A+V
Sbjct: 1   MHYLMTHPGAAWA----LTVVHLRLSLLPVLIGLMSAVPLGLLVQRAPLLRRLTTATASV 56

Query: 61  LLTVPSIALFGLLLPFYSKFGQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAA 120
           + T+PS+ALF ++LP      + L     I A+  Y+   ++R    AL  V   + +AA
Sbjct: 57  IFTIPSLALF-VVLPLIIGT-RILDEANVIVALAAYTTALLVRAVLEALDAVPAQVHDAA 114

Query: 121 RGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRS 180
             IG +   ++  VELP+++PV++AG+R   V NI ++++ + IG GGLG    A    +
Sbjct: 115 TAIGYSRIAQMLKVELPLSIPVLVAGLRVVAVTNIAMVSVGSVIGIGGLGTWFTAGYQTN 174

Query: 181 DMSMLIVGAVLVSLLAIFADLLLQWLQRSLTP 212
               ++ G V + LLAI  D+++    R  TP
Sbjct: 175 KSDQIVAGVVAMFLLAIVVDVVINLAGRLATP 206