Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 536 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  234 bits (598), Expect = 6e-66
 Identities = 137/386 (35%), Positives = 224/386 (58%), Gaps = 3/386 (0%)

Query: 289 DGVSRLMAQTYQLDDATLTFLGQQLEQRLAQNRTHMVVLVSALSAVFLLIFYLYAGFYAS 348
           D ++  + +  ++++     L +   Q+ +     +V L+   + + LL  +L     + 
Sbjct: 152 DAINAAIDRLVEINNLQAEALNKGAAQQYSSAFNWVVTLLLIATGLTLLFAWLLTN--SI 209

Query: 349 TRTTLRRLGAMMDKVAAGDMTVTFVAQSRDELGDLGQVFNGTVAKIHDLIERVGHTVSQV 408
           T+     L A  +++A G++T        DE G L +  +    K+ D ++R+  + +Q+
Sbjct: 210 TKPIANALDAA-EEIAKGNLTRPITVDGSDEAGRLLRAMSTMQEKLRDTLQRISGSATQL 268

Query: 409 ELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDET 468
              A ++ +V+ +S + ++ Q  +IEQ ATA+N+M+S  +EVAR+A +   ++ +     
Sbjct: 269 ASAAEELNSVTDESARGLTQQNNEIEQAATAVNEMTSAVEEVARNAVSTSEASKNATTSA 328

Query: 469 VSGRSLVQSQQGSIARLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAA 528
             GR LVQ    +I R++ ++  +  +I  LA +S+ I  VL+VI+ +A+QTNLLALNAA
Sbjct: 329 GDGRDLVQETVSAIERMSADVQSTAALIGNLADESRDIGKVLDVIRGLADQTNLLALNAA 388

Query: 529 IEAARAGEQGRGFAVVADEVRTLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMAS 588
           IEAARAGE GRGFAVVADEVR LA RTQ ST EIE+MI  +QSG   AV +M +S + A 
Sbjct: 389 IEAARAGEAGRGFAVVADEVRALAHRTQQSTSEIERMIGSIQSGTEHAVDSMRNSTERAE 448

Query: 589 GTVGQSERVQQALENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAE 648
            T+  +     +L+ I  A+  I ++N  IA+A E+Q  VA ++D+N+V I      +A 
Sbjct: 449 STLNIARGAGMSLDTINTAIVEINERNLVIASAAEEQAQVAREVDRNLVNIRDLSVQSAT 508

Query: 649 GAYQTEAASRQLSLQVIELKQLIGAF 674
           GA QT AAS +LS   ++L  ++G F
Sbjct: 509 GANQTSAASAELSRLAVDLNNMVGRF 534



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 19/138 (13%)

Query: 82  TLGQSGKAGDLEGKISALEQSVLSRLQSLNAMATE------------PEQIAAFDAKRDE 129
           T+  S +AG L   +S +++ +   LQ ++  AT+             E       + +E
Sbjct: 233 TVDGSDEAGRLLRAMSTMQEKLRDTLQRISGSATQLASAAEELNSVTDESARGLTQQNNE 292

Query: 130 LIAAFKAQQQETSLLSKSALIGKLLNKAQMLSQIIASQAGLSRD----SQSDLRQLSELI 185
           +  A  A  + TS + + A      ++A   S+   + AG  RD    + S + ++S  +
Sbjct: 293 IEQAATAVNEMTSAVEEVARNAVSTSEA---SKNATTSAGDGRDLVQETVSAIERMSADV 349

Query: 186 TSVTPLVTQTLGEGRAMG 203
            S   L+     E R +G
Sbjct: 350 QSTAALIGNLADESRDIG 367