Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 531 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  227 bits (578), Expect = 1e-63
 Identities = 140/353 (39%), Positives = 201/353 (56%), Gaps = 2/353 (0%)

Query: 325 VVLVSALSAVFLLIFYLYAGFYASTRTTLRRLGAMMDKVAAGDMTVTF-VAQSRDELGDL 383
           V L S L  + L+I    AG        +  L   ++KV+ GD +    V  + DE+G +
Sbjct: 178 VALGSTLCILLLVILGRIAGMNW-LMLQIDELRGRLEKVSQGDFSAPLQVRHADDEMGMI 236

Query: 384 GQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQM 443
              +N  + ++ ++I+ V       + Q  ++  ++  S + V GQ+ +I+QVATAMN+M
Sbjct: 237 TLAYNRLLGQVGEMIKGVRQAADDADAQCVRMAGLAGDSARNVEGQQAEIDQVATAMNEM 296

Query: 444 SSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQLATDS 503
            +T+ EVARS   A ++A     ET +G +++    G+I  L+  +D    V+ QL  DS
Sbjct: 297 LATSHEVARSTVEAANAADVAEQETNAGSTVMNESVGAIRTLSGHVDGLSDVMQQLVQDS 356

Query: 504 QSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRTQHSTEEIE 563
             I  VL VI  IAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA RTQ S +E+ 
Sbjct: 357 HEIGKVLNVISGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQSSAKEVG 416

Query: 564 QMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIAAAVE 623
            ++ RLQS    A  AM +S   ++ T+ Q E  Q AL  I+GAV  I     QIA A E
Sbjct: 417 VLVERLQSQATRAGHAMDASRQSSATTLTQIEAAQHALGQIVGAVQTIRGMTNQIATAAE 476

Query: 624 QQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFRV 676
           +Q+ VA D++Q++  I +  + AA     T A+   +   +  LK L G FR+
Sbjct: 477 EQSQVAEDMNQSLTRIAQVADQAAGVTQDTAASGNTIMQSMKGLKSLTGRFRL 529



 Score = 31.6 bits (70), Expect = 1e-04
 Identities = 47/252 (18%), Positives = 96/252 (38%), Gaps = 29/252 (11%)

Query: 427 SGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRS---LVQSQQGSIA 483
           +GQ   ++ +AT  N + + A EV    +A  + + S       G +   L+    G IA
Sbjct: 137 AGQSADVKAIATDSNDILAAANEVVSLISAEANRSASQQLWVALGSTLCILLLVILGRIA 196

Query: 484 RLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAV 543
            +   + Q  ++  +L   SQ   S    ++   ++  ++ L       + GE  +G   
Sbjct: 197 GMNWLMLQIDELRGRLEKVSQGDFSAPLQVRHADDEMGMITLAYNRLLGQVGEMIKGVRQ 256

Query: 544 VADEVRT----LARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQ 599
            AD+       +A     S   +E   + +     A  + + +SH++A  TV  +     
Sbjct: 257 AADDADAQCVRMAGLAGDSARNVEGQQAEIDQVATAMNEMLATSHEVARSTVEAANAADV 316

Query: 600 A----------LENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQ------------NIV 637
           A          +   +GA+  +      ++  ++Q    +H+I +            N++
Sbjct: 317 AEQETNAGSTVMNESVGAIRTLSGHVDGLSDVMQQLVQDSHEIGKVLNVISGIAEQTNLL 376

Query: 638 EINRAGEHAAEG 649
            +N A E A  G
Sbjct: 377 ALNAAIEAARAG 388