Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 544 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  221 bits (562), Expect = 9e-62
 Identities = 141/353 (39%), Positives = 202/353 (57%), Gaps = 8/353 (2%)

Query: 326 VLVSALSAVFLLIFYLYAGFYASTRTTLRRLGAMMDKVAAG--DMTVTFVAQSRDELGDL 383
           +L+SA+ AV + I         S    LR   A M  +A+G  D+T T      DEL  L
Sbjct: 198 LLISAIMAVLVAILI------RSIVRPLRHTMAAMANIASGEADLTRTLDVSGNDELTTL 251

Query: 384 GQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQM 443
           G+ FN    K+  ++ ++  T   ++  +  +  +S Q+++    Q +Q+EQVATA+N++
Sbjct: 252 GRDFNRFTQKLRTVVGQLFETAGALDQSSRSLSQLSGQAHEQSQQQMLQMEQVATAINEV 311

Query: 444 SSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQLATDS 503
           +   QEVA++A  A S   S  ++   G+  +++    I  L+  I Q+V VI  LA ++
Sbjct: 312 TYAVQEVAKNAEHASSEVGSAENQAGQGQRNIETSLQQIDELSATIGQAVDVIQSLADET 371

Query: 504 QSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRTQHSTEEIE 563
             I SVLEVI SIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR LA+RTQ ST EI 
Sbjct: 372 TKIGSVLEVIGSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRLLAQRTQQSTAEIH 431

Query: 564 QMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIAAAVE 623
            MI RLQ    AAV  +  S+  +  TV Q+ +  ++L  I  A+  +   N  IA+A  
Sbjct: 432 GMIERLQKNSGAAVNVIMESNRASQLTVEQASQAGESLGEIAQALRNLSGLNASIASATL 491

Query: 624 QQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFRV 676
           QQ+ V  DI+QN+ +     + +   A Q+  A +QL     +L +L+  FRV
Sbjct: 492 QQSHVVEDINQNVTQAAGLAQESTLAAEQSSEAGKQLGELAGQLNRLLSQFRV 544



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 47/209 (22%)

Query: 67  RRDLETLNNQV-QINATLGQS--------------GKAGDLEGKISALEQSVLSRLQSLN 111
           +R++ET   Q+ +++AT+GQ+              G   ++ G I+  EQ+ L  L +  
Sbjct: 340 QRNIETSLQQIDELSATIGQAVDVIQSLADETTKIGSVLEVIGSIA--EQTNLLALNAAI 397

Query: 112 AMATEPEQIAAFDAKRDELIAAFKAQQQETSLL---------SKSALIGKLL--NKAQML 160
             A   EQ   F    DE+    +  QQ T+ +         +  A +  ++  N+A  L
Sbjct: 398 EAARAGEQGRGFAVVADEVRLLAQRTQQSTAEIHGMIERLQKNSGAAVNVIMESNRASQL 457

Query: 161 S---------------QIIASQAGLSRDSQSDLRQLSELITSVTPLVTQTLGEGRAMGAY 205
           +               Q + + +GL+    S   Q S ++  +   VTQ  G    +   
Sbjct: 458 TVEQASQAGESLGEIAQALRNLSGLNASIASATLQQSHVVEDINQNVTQAAG----LAQE 513

Query: 206 SLGQGFLNSSSSTRFDELLQQLEKIQAEY 234
           S      +S +  +  EL  QL ++ +++
Sbjct: 514 STLAAEQSSEAGKQLGELAGQLNRLLSQF 542