Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  226 bits (575), Expect = 3e-63
 Identities = 169/541 (31%), Positives = 262/541 (48%), Gaps = 31/541 (5%)

Query: 137 QQQETSLLSKSALIGKLLNKAQMLSQIIASQAGLSRDSQSDLRQLSELITSVTPLVTQTL 196
           Q Q  SL + +A   + +  A+  S+I   + G+      D+  L E        V + +
Sbjct: 38  QAQSNSLYANTAAPMRAM--AEATSRIPRMRVGI------DMMLLQETALKDAKGVLKRV 89

Query: 197 GEGRAMGAYSLGQGFLNSSSSTRFDELLQQLEKIQAEYGLKLQDALGSSKAAHAALDGLA 256
            E R      + Q    +  S    EL +Q  K+QA +   +++ L     A A  D + 
Sbjct: 90  EEARTEDIPEMRQAMQVAVDSQVNPELKEQARKLQARFEQMVREELEPMLQAFANND-MT 148

Query: 257 KSSNASLKQGSELFEEQVVMAETLDAPWQDFYDGVSRLMAQTYQLDDATLTFLGQQLEQR 316
            + N    + +  + E    A  +          +  L+ Q  Q + A++        + 
Sbjct: 149 TAQNIYRDKYAPTYGEMRKQANQI----------LDTLLQQAEQQNHASV--------ES 190

Query: 317 LAQNRTHMVVLVSALSAVFLLIFYLYAGFYASTRTTLRRLGAMMDKVAAG-DMTVTFVAQ 375
               RT  +V+++A     ++ F        + R+ +  L   M   AA   +       
Sbjct: 191 FEAGRTKQMVIIAA---GLIISFITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELD 247

Query: 376 SRDELGDLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQ 435
             DEL D+G+ FN  + K+H  IE V     ++   A  V   +  +    + QR +  Q
Sbjct: 248 GNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQ 307

Query: 436 VATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQV 495
           VATA++++ +T  E+A +AA A   A      +  G+ +V   Q  I  L  E+D + QV
Sbjct: 308 VATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQV 367

Query: 496 INQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRT 555
           ++ LAT    ISS L+ I+SI+EQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLA R+
Sbjct: 368 VSSLATQINGISSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRS 427

Query: 556 QHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQN 615
             STEEI+Q+I+RLQ+    AV+AM      +   V  S +  Q+L  I   +  I DQN
Sbjct: 428 AASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTEINSQIDQINDQN 487

Query: 616 QQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFR 675
            Q+A A E+Q+ V  DI++N+ +IN+     +  A +   AS  L     +L +L+G+F 
Sbjct: 488 IQVATATEEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFE 547

Query: 676 V 676
           +
Sbjct: 548 L 548