Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 642 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  238 bits (607), Expect = 7e-67
 Identities = 136/347 (39%), Positives = 211/347 (60%), Gaps = 4/347 (1%)

Query: 333 AVFLLIFYLYAGFYASTRTTLRRLGAMM---DKVAAGDMTVTFVAQSRDELGDLGQVFNG 389
           AV +L+  ++A     TR   R L + +    ++A GD+T       +DELG L      
Sbjct: 297 AVIVLLLGIFAAILI-TRQITRPLDSTVIAARRIADGDLTNDLSTTRQDELGLLQNTMQH 355

Query: 390 TVAKIHDLIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQMSSTAQE 449
               +  LI  + + V+Q+   A ++  VS Q++  V+ Q+++++QVATAMNQM+ST QE
Sbjct: 356 MTVSLRTLIGGISNGVTQIATAAEELSAVSEQTSAGVTQQKLEVDQVATAMNQMASTVQE 415

Query: 450 VARSAAAAVSSAHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQLATDSQSISSV 509
           VA++   A  +A   +D    G S+VQ     I++LA E+ Q  + + +L  DS  I  V
Sbjct: 416 VAQNTEDASQAARQASDRAAHGSSVVQHATREISQLAGEVGQLGEAMQRLIQDSDKIGGV 475

Query: 510 LEVIKSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARRTQHSTEEIEQMISRL 569
           ++VIK++AEQTNLLALNAAIEAARAGEQGRGFAVVADEVR+LA+RTQ ST EIE +I  L
Sbjct: 476 IDVIKAVAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAQRTQSSTTEIEALIKSL 535

Query: 570 QSGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIAAAVEQQTAVA 629
           Q G  AA + M +S     GTV  + + +++L  I  ++  I   +QQI+AA E+Q+AV 
Sbjct: 536 QDGTGAASELMNASRQRTEGTVALARQAEESLLEITHSIVTIEQMSQQISAAAEEQSAVT 595

Query: 630 HDIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAFRV 676
            +I+++++ +    + +A    Q+ A++ +L+     L+ ++  FR+
Sbjct: 596 DEINRSVISVRDIADQSATATEQSAASTVELARLGSNLQDMVARFRI 642



 Score = 34.3 bits (77), Expect = 2e-05
 Identities = 54/284 (19%), Positives = 116/284 (40%), Gaps = 23/284 (8%)

Query: 397 LIERVGHTVSQVELQAGQVETVSAQSNQAVSGQRMQIEQVATAMNQMSSTAQEVARSAAA 456
           LIER+G      E++A  +    A             +   +A++ +  T ++  +    
Sbjct: 40  LIERLGKAAKVSEVKADALSLRIAAQTYTAKPDASNSQGYTSALDNLGKTIEDGLKILTV 99

Query: 457 AVSS--AHSVNDETVSGRSLVQSQQGSIARLATEIDQSVQVINQLATDSQSISSVLEVI- 513
            V++     + D+      +++     +     +IDQ++Q    L T S+ +S   E + 
Sbjct: 100 PVNADMLRGIRDQA----GVLKQTFSQLVDNNRQIDQAMQ---PLITISEQVSGSFETLL 152

Query: 514 -KSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLARR--TQHSTEEIEQMISRLQ 570
            K+  + +  L  +   +   AG+   G        R + RR  +  + E  +       
Sbjct: 153 QKTFDDVSRSLDQSGIDQVKIAGDLRNGMT----NFRLVFRRYISIPTAENRQITFDAAD 208

Query: 571 SGVAAAVKAMGSSHDMASGTVGQSERVQQALENILGAVGMIVDQNQQIAAAVEQQTAVAH 630
           S +A    A     + A   V ++    Q  ++++ ++  ++ QN QI  ++ QQ+    
Sbjct: 209 SLIAQVGSARNQLPNKAGPAVDEALAALQQYKSLMVSISQLMQQNDQIRDSLRQQSM--- 265

Query: 631 DIDQNIVEINRAGEHAAEGAYQTEAASRQLSLQVIELKQLIGAF 674
           DI  +  ++  AG+  +    +  A ++ L++ VI L  L+G F
Sbjct: 266 DIVTSAEKL-MAGQVVSANKEKDSAVTQLLTVAVIVL--LLGIF 306