Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 681 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  245 bits (625), Expect = 6e-69
 Identities = 193/620 (31%), Positives = 318/620 (51%), Gaps = 38/620 (6%)

Query: 80  NATLGQSGKAGDLEGKISALEQSVLSRLQSLNAMATEPEQ--IAAFDAKRDELIAAFKAQ 137
           N  + + GK+     K++ ++  VL+   +  A AT P    +  + +  D L  +    
Sbjct: 77  NLLIERMGKSS----KVAEIKADVLNARIAAQAYATGPTAAGVQNYASALDTLSRSVDQG 132

Query: 138 QQETSLLSKSALIGKLLNKAQMLSQIIASQAGLSRDSQSDLRQLSELITSVTP----LVT 193
            Q   + S  A + ++  +   L Q      G+++     L+ + ++   V+     L+ 
Sbjct: 133 LQVFVISSNLAKLREIKEQVGGLKQTFDQLVGINQKVDEALKPIIKVSDDVSATFENLLN 192

Query: 194 QTL----------GEGRAMGAYSLGQGFLNSSSSTRFDELLQQLEKIQAEYGLKLQDALG 243
           +T+          G  +   A  L  G  N     R    +   +  QA Y  K  DAL 
Sbjct: 193 KTIDDTLRAPNETGIRQVKIAGDLRNGMTNFRLVFRRYLSVPNADNRQATY--KAADALI 250

Query: 244 SSKAAHAALDGLAKSSNASLKQGSELFEEQVVM----AETLDAPWQDFYDGVSRLMAQTY 299
           +     AA   L   +NA++       ++  V+    ++ L    Q   D   + +A   
Sbjct: 251 AQ--VDAARSQLPVEANAAVDAALVALKQYKVLMTSISDMLQQTEQIRNDLQQQSVATAA 308

Query: 300 QLDD-ATLTFLGQQLEQRLAQNRTHMVVLVSALSAVFLLIFYLYAGFYASTRTTLRRLGA 358
           + DD A L  +  + EQ+ A     +V L+S   A+ +L+  ++A F  + + T+     
Sbjct: 309 RADDLAALQVISAKKEQQTA-----VVQLLSV--ALVVLLVGIFAAFLITRQITVPLNST 361

Query: 359 MMD--KVAAGDMTVTFVAQSRDELGDLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVE 416
           ++   ++A GD+T       +DELG L          +  LI  +G+ V+Q+   A Q+ 
Sbjct: 362 VIAARRIADGDLTHDSSTTRQDELGLLQNTMQHMTVSLRGLIGGIGNGVTQIATAAEQLS 421

Query: 417 TVSAQSNQAVSGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQ 476
            VS Q++  V+ Q+ +++QVATAMN+M+ST QEVAR+   A  +A   ++    G S+VQ
Sbjct: 422 AVSEQTSAGVTLQKNEVDQVATAMNEMASTVQEVARNTEDASQAAKQASERAAHGSSVVQ 481

Query: 477 SQQGSIARLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGE 536
                I +LA E+ Q  + + +L  DS  I SV++VIK++AEQTNLLALNAAIEAARAGE
Sbjct: 482 HATREIGQLAGEVQQLGEAMQRLTEDSGKIGSVIDVIKAVAEQTNLLALNAAIEAARAGE 541

Query: 537 QGRGFAVVADEVRTLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSER 596
           QGRGFAVVADEVR+LA+RTQ+ST EIE +I  LQ G  AA   M +S     GTV  + +
Sbjct: 542 QGRGFAVVADEVRSLAQRTQNSTTEIEALIQALQKGTGAASGLMDASLQRTEGTVVLARQ 601

Query: 597 VQQALENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAA 656
            +QAL  I  ++G I   +QQI+AA EQQ+AV  +I+++++ +    + +A    Q+ A+
Sbjct: 602 AEQALVEINQSIGTIEQMSQQISAAAEQQSAVTEEINRSVLSVRDIADQSASATEQSAAS 661

Query: 657 SRQLSLQVIELKQLIGAFRV 676
           + +L+    +L+ ++  F++
Sbjct: 662 TVELARLGSDLQSMVARFKI 681