Pairwise Alignments

Query, 676 a.a., chemotaxis protein from Pseudomonas simiae WCS417

Subject, 546 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  226 bits (575), Expect = 3e-63
 Identities = 125/315 (39%), Positives = 191/315 (60%)

Query: 362 KVAAGDMTVTFVAQSRDELGDLGQVFNGTVAKIHDLIERVGHTVSQVELQAGQVETVSAQ 421
           ++A+GD+T+   +Q  DE G +    +     +   I ++     Q+   A ++  V+ +
Sbjct: 232 RIASGDLTLPIASQYHDEAGMMLVALSDMQDNLKSTIGQISSAADQLASAAEELNAVTEE 291

Query: 422 SNQAVSGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQSQQGS 481
           S++ +  Q  +I+Q A+A+N+M++  +EVAR+A +   ++   + +  +GR   +    +
Sbjct: 292 SSRGLIRQNDEIQQAASAVNEMTAAVEEVARNAMSTSEASRQTSTDAAAGRDQARDAVNA 351

Query: 482 IARLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGEQGRGF 541
           I  ++ EI  S  ++ +LA   + I  VL+VI+ IAEQTNLLALNAAIEAARAGEQGRGF
Sbjct: 352 INTVSAEISSSTTMVEELAGRVREIGQVLDVIRGIAEQTNLLALNAAIEAARAGEQGRGF 411

Query: 542 AVVADEVRTLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQSERVQQAL 601
           AVVADEVR LA RTQ ST EIE MI  +Q+    AV+AM +S  + S T   ++   Q+L
Sbjct: 412 AVVADEVRALAARTQASTGEIETMIGSVQASADQAVRAMANSRTLTSNTQTLAQATGQSL 471

Query: 602 ENILGAVGMIVDQNQQIAAAVEQQTAVAHDIDQNIVEINRAGEHAAEGAYQTEAASRQLS 661
           E I  +V  I D+N  IA A E+Q+ VA ++D+N+V I       A GA+QT A+S++LS
Sbjct: 472 ERIAQSVAEINDRNMLIATASEEQSHVAREVDRNLVNIQDLSAQTAAGAHQTSASSQELS 531

Query: 662 LQVIELKQLIGAFRV 676
              I    L+G F+V
Sbjct: 532 RLAISFNNLVGKFKV 546



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 65/344 (18%), Positives = 131/344 (38%), Gaps = 44/344 (12%)

Query: 358 AMMDKVAAGDMTVTFVAQSRDELGDLGQVFNGTVAKI-HDLIERVGHTVSQVELQAGQVE 416
           +++    +G++T + +AQ+RD    L  +       +  D++  +    +Q E       
Sbjct: 49  SLLSVTKSGEVTASVIAQNRDLYRLLAAMAGNAPQSVKDDILASMSANKTQAEKSYATYR 108

Query: 417 TVSAQSNQAVSGQRMQIEQVATAMNQMSSTAQEVARSAAAAVSSAHSVNDETVSGRSLVQ 476
                 ++  +G   Q+++       +   A+ VA S    ++ A ++ D  V    L  
Sbjct: 109 ATPLDDDERAAGD--QMDRDWPGYQALIEQAKSVALS--GDIAGARAIIDGDVRSGYL-- 162

Query: 477 SQQGSIARLATEIDQSVQVINQLATDSQSISSVLEVIKSIAEQTNLLALNAAIEAARAGE 536
                       +DQ   ++N     +   +   +  ++ A++   + +  +  AA    
Sbjct: 163 ----------KVMDQLTTIVNSNNRQAGEAAVASDQTQNSAQRNLYIGIGLSFFAAFVMG 212

Query: 537 Q--GRGFAVVADEVRTLARRTQHSTEEIEQMISRLQSGVAAAVKAMGSSHDMASGTVGQ- 593
               R  +   +   T ARR   S +    + S+        + A+    D    T+GQ 
Sbjct: 213 LFISRAISTPINTAVTNARRIA-SGDLTLPIASQYHDEAGMMLVALSDMQDNLKSTIGQI 271

Query: 594 ---SERVQQALENILGAV------GMI--VDQNQQIAAAVEQQTAVAHDIDQNIVEINRA 642
              ++++  A E  L AV      G+I   D+ QQ A+AV + TA   ++ +N +  + A
Sbjct: 272 SSAADQLASAAEE-LNAVTEESSRGLIRQNDEIQQAASAVNEMTAAVEEVARNAMSTSEA 330

Query: 643 GEH----AAEGAYQTEAA-------SRQLSLQVIELKQLIGAFR 675
                  AA G  Q   A       S ++S     +++L G  R
Sbjct: 331 SRQTSTDAAAGRDQARDAVNAINTVSAEISSSTTMVEELAGRVR 374